mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 4,520,501 | 0 | A | . | 27.1% | 257.6 / 98.7 | 97 | intergenic (‑176/+171) | yjhU/yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| * | NC_000913_3_bme_pgi | 4,520,505 | 1 | . | T | 26.8% | 225.2 / 124.0 | 97 | intergenic (‑180/+167) | yjhU/yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| * | NC_000913_3_bme_pgi | 475,971 | 0 | C | G | 21.9% | 286.4 / 87.4 | 123 | intergenic (+20/+11) | ybaY/ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| * | NC_000913_3_bme_pgi | 475,972 | 0 | C | G | 21.9% | 282.3 / 87.7 | 123 | intergenic (+21/+10) | ybaY/ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 21.1% | 235.5 / 50.2 | 114 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_bme_pgi | 3,439,588 | 0 | G | C | 20.9% | 201.5 / 53.4 | 86 | intergenic (‑79/+28) | yhdN/rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| * | NC_000913_3_bme_pgi | 1,015,912 | 0 | T | A | 20.6% | 244.2 / 62.3 | 102 | intergenic (+30/+40) | rmf/fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| * | NC_000913_3_bme_pgi | 1,865,682 | 0 | G | C | 20.2% | 275.1 / 67.1 | 114 | intergenic (‑46/+44) | yeaE/mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| Marginal new junction evidence (lowest skew 10 of 794 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 3944978 | NA (NA) | 31 (0.360) | 22/242 | 5.2 | 52.9% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 4038811 | 29 (0.320) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_bme_pgi | 2727891 = | NA (NA) | 30 (0.350) | 21/242 | 5.5 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_bme_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_bme_pgi | 4168398 = | 41 (0.460) | 23 (0.270) | 20/242 | 5.7 | 33.1% | noncoding (27/76 nt) | gltT | tRNA‑Glu |
| ? | NC_000913_3_bme_pgi | 4168417 = | 54 (0.630) | noncoding (46/76 nt) | gltT | tRNA‑Glu | |||||
| * | ? | NC_000913_3_bme_pgi | = 227052 | 56 (0.620) | 29 (0.340) | 20/242 | 5.7 | 35.2% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 1552077 | 111 (1.240) | 22 (0.260) | 19/240 | 5.9 | 18.4% | noncoding (7/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_bme_pgi | = 4409176 | 91 (1.070) | noncoding (23/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_bme_pgi | 4168411 = | 55 (0.610) | 22 (0.260) | 19/242 | 6.0 | 29.6% | noncoding (40/76 nt) | gltT | tRNA‑Glu |
| ? | NC_000913_3_bme_pgi | 4209806 = | NA (NA) | noncoding (33/76 nt) | gltV | tRNA‑Glu | |||||
| * | ? | NC_000913_3_bme_pgi | = 2729418 | 37 (0.410) | 22 (0.260) | 19/242 | 6.0 | 32.8% | noncoding (27/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913_3_bme_pgi | 4168417 = | 55 (0.640) | noncoding (46/76 nt) | gltT | tRNA‑Glu | |||||
| * | ? | NC_000913_3_bme_pgi | 2726200 = | NA (NA) | 36 (0.420) | 19/242 | 6.0 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_bme_pgi | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 3891488 | 91 (1.010) | 22 (0.240) | 20/254 | 6.1 | 19.0% | intergenic (+5/‑127) | tnaB/mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| ? | NC_000913_3_bme_pgi | = 3891519 | 97 (1.080) | intergenic (+36/‑96) | tnaB/mdtL | tryptophan transporter of low affinity/multidrug efflux system protein | |||||
| * | ? | NC_000913_3_bme_pgi | = 3943624 | NA (NA) | 22 (0.260) | 18/240 | 6.2 | 42.1% | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 4037457 | 32 (0.360) | intergenic (+122/‑62) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||