Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913_3_bme_pgi	1,927,949	A→C	R297R (CGT→CGG)	ptrB ←	protease II

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913_3_bme_pgi	1,927,949	0	A	C	100.0%	142.0 / NA	41	R297R (CGT→CGG)	ptrB	protease II
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (22/19);  total (22/19)

TAATTTGGCGCAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCG  >  NC_000913_3_bme_pgi/1927810‑1928079                                                                                                                                            |                                                                                                                                   tAATTTGGCGCAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGc                                                                                                                          <  4:128058/150‑1 (MQ=255)   aTTTGGCGCAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCa                                                                                                                        <  3:39036/150‑1 (MQ=255)        gcgcAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGtt                                                                                                                   >  1:381779/1‑150 (MQ=255)        gcgcAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGtt                                                                                                                   >  1:513196/1‑150 (MQ=255)            aaaCTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTg                                                                                                               >  4:214341/1‑150 (MQ=255)            aaaCTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTg                                                                                                               <  1:70044/150‑1 (MQ=255)                  gTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTgg                                                                                                         >  4:321034/1‑150 (MQ=255)                      aCCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAGCCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGt                                                                                                     >  2:389428/1‑150 (MQ=255)                                         aaCCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGtt                                                                                                    <  1:35448/132‑1 (MQ=255)                                         aaCCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGtt                                                                                                    >  2:35448/1‑132 (MQ=255)                                          accaccAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGa                                                                                 <  2:381779/150‑1 (MQ=255)                                            caccaGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATg                                                                               >  2:98875/1‑150 (MQ=255)                                                  ccagTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTa                                                                         <  1:98875/150‑1 (MQ=255)                                                   cagTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCg                                                                                                                                  <  4:51273/92‑1 (MQ=255)                                                          tAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCaa                                                                 >  2:25545/1‑150 (MQ=255)                                                              cAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCt                                                             <  1:389428/150‑1 (MQ=255)                                                              cAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCt                                                             >  2:410010/1‑150 (MQ=255)                                                               aGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTg                                                            <  3:321034/150‑1 (MQ=255)                                                                  gTAAACCCTTTCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCAGCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTg                                                                            <  4:334305/131‑1 (MQ=255)                                                                  gTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTg                                                                            >  3:334305/1‑131 (MQ=255)                                                                    aaaCCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTc                                                       <  1:410010/150‑1 (MQ=255)                                                                              aGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCATGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGt                                                     >  2:189455/1‑142 (MQ=255)                                                                              aGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCATGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGt                                                     <  1:189455/142‑1 (MQ=255)                                                                              aGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGtt                                                                                                    <  2:408592/95‑1 (MQ=255)                                                                              aGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGtt                                                                                                    >  1:408592/1‑95 (MQ=255)                                                                               gCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCTGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTgt                                            >  2:308032/1‑149 (MQ=255)                                                                                      gTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTgcggcgcgg                                     <  3:93590/150‑1 (MQ=255)                                                                                                   ggAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAaaacaaac                        >  4:14557/1‑150 (MQ=255)                                                                                                               tCCCACTGTTGCTCATCGCGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCg            >  3:240739/1‑150 (MQ=255)                                                                                                                 ccACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATACAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGc                <  1:495778/144‑1 (MQ=255)                                                                                                                 ccACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGc                >  2:495778/1‑144 (MQ=255)                                                                                                                  cACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGcc         >  2:281504/1‑150 (MQ=255)                                                                                                                       ttGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTTTCTTTTTTTTTGGAACGCAGAGAAAAACGATGCTGATAGTGATGAAGGCTGTATTCGTGATCTTTGCTGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTc    >  4:21122/1‑150 (MQ=255)                                                                                                                         gCTCATCGCGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCcg  <  4:240739/150‑1 (MQ=255)                                                                                                                         gCTCATCACGCATACGGGTCCGGTATAAGCCAAAGCTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAAGAAACGGATCGGCATCGGCCATTTcgg  >  2:571875/1‑148 (MQ=255)                                                                                                                                aCGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAaaacaaa                         <  2:492314/120‑1 (MQ=255)                                                                                                                                aCGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAaaacaaa                         >  1:492314/1‑120 (MQ=255)                                                                                                                                  gCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAGCGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTg                                             <  4:246744/98‑1 (MQ=255)                                                                                                                                  gCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAGCGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTg                                             >  3:246744/1‑98 (MQ=255)                                                                                                                                        gggTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGa                                                   <  3:70961/86‑1 (MQ=255)                                                                                                                                        gggTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGa                                                   >  4:70961/1‑86 (MQ=255)                                                                                                                                            |                                                                                                                                   TAATTTGGCGCAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCG  >  NC_000913_3_bme_pgi/1927810‑1928079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑