mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | 100% | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 258,768 | G→A | 19.2% | pseudogene (93/331 nt) | crl → | RNA polymerase holoenzyme assembly factor Crl |
| RA | 1,076,773 | C→A | 8.5% | A704S (GCT→TCT) | putA ← | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | insH21 | insH21 | |
| RA | 1,955,394 | C→T | 10.2% | A538A (GCG→GCA) | torZ ← | trimethylamine N‑oxide reductase 2 |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA‑5 ← / → uspC | IS1 protein InsA/universal stress protein C |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (917‑918/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,712,451 | A→G | 9.7% | I105T (ATT→ACT) | yfiC ← | tRNA m(6)A37 methyltransferase |
| RA | 3,560,455:1 | +G | 100% | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| JC JC | 3,651,029 | IS2 (+) +5 bp | 91.4% | intergenic (+367/‑258) | arsC → / → yhiS | arsenate reductase/putative uncharacterized protein YhiS |
| RA | 3,991,328 | A→T | 11.9% | K59I (AAA→ATA) | cyaA → | adenylate cyclase |
| RA | 4,182,820 | C→T | 32.4% | H526Y (CAC→TAC) | rpoB → | RNA polymerase subunit beta |
| RA | 4,183,379 | C→T | 62.6% | S712F (TCC→TTC) | rpoB → | RNA polymerase subunit beta |
| RA | 4,296,060 | C→T | 44.6% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423895–3424234 | 3424496–3424239 | 6–602 | 7 [6] | [5] 10 | rrlD | 23S ribosomal RNA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 151467 = | 31 (0.990) | 4 (0.130) | 3/400 | NT | 13.1% | coding (133/597 nt) | yadK | putative fimbrial protein YadK |
| ? | NC_000913 | 151543 = | 23 (0.760) | coding (57/597 nt) | yadK | putative fimbrial protein YadK | |||||
| * | ? | NC_000913 | 1207790 = | 21 (0.670) | 7 (0.240) | 7/382 | NT | 25.3% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 22 (0.770) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 21 (0.670) | 21 (0.730) | 19/382 | NT | 50.4% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 22 (0.770) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 3717730 = | 31 (0.990) | 4 (0.130) | 4/394 | NT | 12.4% | coding (421/975 nt) | ghrB | glyoxylate reductase |
| ? | NC_000913 | = 3919436 | 27 (0.910) | coding (422/1542 nt) | atpA | ATP synthase F1 complex subunit alpha | |||||