mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | 100% | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 470,579 | A→T | 14.3% | Y570F (TAT→TTT) | mdlA → | ABC transporter family protein MdlA |
| RA | 1,234,632 | A→G | 20.0% | L29S (TTA→TCA) | nhaB ← | Na(+):H(+) antiporter NhaB |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | insH21 | insH21 | |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA‑5 ← / → uspC | IS1 protein InsA/universal stress protein C |
| RA | 2,070,891 | G→T | 12.2% | pseudogene (106/426 nt) | yeeP → | CP4‑44 prophage; putative GTP‑binding protein |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (917‑918/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 3,560,455:1 | +G | 100% | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,515,480 | C→T | 100% | G400S (GGC→AGC) | fecA ← | ferric citrate outer membrane transporter |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423844–3424233 | 3424461–3424239 | 7–618 | 4 [3] | [3] 4 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 502521 = | 24 (1.000) | 88 (3.790) | 62/372 | NT | 82.2% | coding (718/1677 nt) | ybaL | putative transporter YbaL |
| ? | NC_000913 | = 556662 | 15 (0.650) | coding (212/213 nt) | ybcJ | putative RNA‑binding protein YbcJ | |||||
| * | ? | NC_000913 | 514867 = | 130 (5.400) | 111 (4.810) | 65/370 | NT | 49.2% | coding (907/918 nt) | qmcA | PHB domain‑containing protein |
| ? | NC_000913 | = 554450 | 105 (4.550) | intergenic (‑13/‑161) | ppiB/cysS | peptidyl‑prolyl cis‑trans isomerase B/cysteine‑‑tRNA ligase | |||||
| * | ? | NC_000913 | 1207790 = | 21 (0.870) | 14 (0.630) | 11/354 | NT | 50.7% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 8 (0.360) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||