| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4087883 | 72 (1.230) | 3 (0.060) | 3/90 | NT | 4.1% | intergenic (‑552/‑60) | malT/malP | DNA‑binding transcriptional activator, maltotriose‑ATP‑binding/maltodextrin phosphorylase |
| ? | AP009048 | = 4087912 | 78 (1.510) | intergenic (‑581/‑31) | malT/malP | DNA‑binding transcriptional activator, maltotriose‑ATP‑binding/maltodextrin phosphorylase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTGAGATCACATTTCCTTGCTCATCCCCGCAACTCCTCCCTGCCTAATCCCCCGCAGGATGAGGAAGGTCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4087809‑4087883‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaacaCAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGA < AP009048/4087912‑4087843 GTTGAGATCACATTTCCTTGCTCATCCCCGCAACTCCTCCCTGCCTAATCCCCCGCAGGATGAGGAAGGTC < 1:5193864/71‑1GTTGAGATCACATTTCCTTGCTCATCCCCGCAACTCCTCCCTGCCTAATCCCCCGCAGGATGAGGAAGGT > 1:5165403/1‑70 TTGAGATCACATTTCCTTGCTCATCCCCGCAACACCTCCCTGCCTAATCCCCCGCAGGATGAGGAAGGT < 1:2349786/69‑1 GAGATCACATTTCCTTGCTCATCCCCGCAACTCCTCCCTGCCTAATCCCCCGCAGGATGAGGAAGGTCAA > 1:4917097/1‑70 GAGATCACATTTCCTTGCTCATCCCCGCAACTCCTCCCTGCCTAATCCCCCGAAGGATGAGGAAGGTCAA > 1:4826618/1‑70 AGATCACATTTCCTTGCTCATCCCCGCAACTCCTCCCTGCCTAATCCCCCGCAGGATGAGGAAGGTCAACA > 1:3781328/1‑71 CTCCCTGCCTAATCCCCCGCAGGATGAGGAAGGTC > 1:5282537/1‑35 TGCCTAATCCCCCGCAGGATGAGGAAGGTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTT < 1:3608831/67‑1 CCTAATCCCCCGCAGGATGAGGAAGGTCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGA > 1:790103/1‑67 TAATCCCCCGCAGGATGAGGAAGGTCAACACAACGTTATCGCTAGTTTGCCAGGCT < 1:1703098/56‑1 TCAACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCT > 1:1938997/1‑54 CAACACAACGTTATCGCTAGTTTCCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGG < 1:45110/70‑1 AACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGG < 1:4633253/70‑1 AACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGG > 1:37462/1‑69 AACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGCCAGGGA < 1:9285/71‑1 AACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCAT > 1:5269395/1‑49 ACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATT < 1:2234552/61‑1 ACACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCC < 1:3167210/44‑1 CACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCTGGGGATTAGGCAGGGAG > 1:3288888/1‑70 CACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAG > 1:5034121/1‑70 CACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAG > 1:995849/1‑70 CACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGG < 1:3771618/63‑1 ACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGA < 1:2217808/71‑1 ACAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAG > 1:594705/1‑69 GTTGAGATCACATTTCCTTGCTCATCCCCGCAACTCCTCCCTGCCTAATCCCCCGCAGGATGAGGAAGGTCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4087809‑4087883‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaacaCAACGTTATCGCTAGTTTGCCAGGCTCGATGTTGACCTTCCTCATCCTGCGGGGGATTAGGCAGGGAGGA < AP009048/4087912‑4087843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |