| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4060260 | 67 (1.140) | 3 (0.060) | 3/92 | NT | 4.6% | coding (651/1038 nt) | yhhX | predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| ? | AP009048 | = 4060269 | 64 (1.210) | coding (660/1038 nt) | yhhX | predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTCGCTTATGACATCCGCAGCCTGCGTAATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4060186‑4060260‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcTTTCAGGTCGCCATAAAACAGTTGCGCTTCAAAGGTGTCGTCAGGATTGGCTTTATTACGCAGGCTGC < AP009048/4060269‑4060202 GTCGCTTATGACATCCGCAGCCTGCGTAATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTA < 1:3394150/71‑1 TCGCTTATGACATCCGCAGCCTGCGTAATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTAT < 1:4513205/71‑1 TCGCTTATGACATCCGCAGCCTGCGTAATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTAT < 1:4234462/71‑1 GCTTATGACATCCGCAGCCTGCGTAATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTATGG > 1:4056210/1‑71 GCTTATGACATCCGCAGCCTGCGTAATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTATGG > 1:228961/1‑71 GCTTATGACATCCGCAGCCTGCGTAATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTATGG > 1:3834783/1‑71 GCTTATGACATCCGCAGCCTGCGTAATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTATGG > 1:3047009/1‑71 TGCTTAATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTAT < 1:3784905/50‑1 TGCGTAATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTAT < 1:3856992/50‑1 GCGTAATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTA > 1:5135592/1‑48 CGTAATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTA > 1:132178/1‑47 AATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTATGG > 1:1373540/1‑47 TAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTA > 1:523281/1‑42 TAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTA < 1:4583559/42‑1 AAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTA > 1:1876170/1‑41 AGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTATGG > 1:1221481/1‑42 GCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTATGGCTTTCAGGTCGCCAT > 1:1448786/1‑56 GACACCTTTGAAGCGCAACTGTTTTATGGCTTTCAGGTCGCC < 1:2173519/42‑1 CACCTTTGAAGCGCAACTGTTTTATGGCTTTCAGGTCGCCA > 1:2951422/1‑41 ATGGCTTTCAGGTCGCCATAAAACAGTTGCGCTTCAAAGGTGTCGTCAGGATTGGCTTTATTACGCAGGCT < 1:3461451/71‑1 TGGCTTTCAGGTCGCCATAAAACAGTTGCGCTTCAAAGGTGTCGTCAGGATTGGCTTTATTACGCAGGCTG > 1:363717/1‑71 TGGCTTTCAGGTCGCCATAAAACAGTTGCGCTTCAAAGGTGTCGTCAGGAT > 1:1327147/1‑51 GGCTTTCAGGTCGCCATAAAACAGTTGCGCTTCAAAGGTGTCGTCAGGATTGGCTTTATTACGCAGGCTGC > 1:2359227/1‑71 GGCTTTCAGGTCGCCATAAAACAGTTGCGCTTCAAAGGTGTCGTCAGGATTGGCTTT > 1:4341159/1‑57 CTTTCAGGTCGCCATAAAACAGTTGCGCTTCAAAGGTGTCGTCAGGATTGGCTTTATTACGCAGGCTGC < 1:3408929/69‑1 CTTTCAGGTCGCCATAAAACAGTTGCGCTTCAAAGGTGTCGTCAGGATTGGCTTTA < 1:3796963/56‑1 CTTTCAGGTCGCCATAAAACAGTTGCGCTTCAAAGGTGTCGTCAGGATTGGCTTTA < 1:1750534/56‑1 CTTTCAGGTCGCCATAAAACAGTTGCGCTTCAAAGGTGTCGTCAGGATTGGCTT < 1:2712553/54‑1 CTTTCAGGTCGCCATAAAACAGTTGCGCTTCAAAGGTGTCGTCAGGATTGGCTT < 1:5027554/54‑1 GTCGCTTATGACATCCGCAGCCTGCGTAATAAAGCCAATCCTGACGACACCTTTGAAGCGCAACTGTTTTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4060186‑4060260‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcTTTCAGGTCGCCATAAAACAGTTGCGCTTCAAAGGTGTCGTCAGGATTGGCTTTATTACGCAGGCTGC < AP009048/4060269‑4060202 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |