| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3893384 | 69 (1.180) | 3 (0.060) | 3/94 | NT | 4.7% | coding (938/987 nt) | yiaO | predicted transporter |
| ? | AP009048 | = 3893395 | 57 (1.060) | coding (927/987 nt) | yiaO | predicted transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCCCAGCCAGTATTGCGTCATGGTTTATTGCACCTCATCCACGGCTTTCAGCAGATCAGCTCCCTGCGGCACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3893311‑3893384‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatGTTTGTTAAAGATGTGCCGCAGGGAGCTGATCTGCTGAAAGCCGTGGATGAGGTGCAATAAACCATGAC < AP009048/3893395‑3893327 CCCCAGCCAGTATTGCGTCATGGTTTATTGCACCTCATCCACGGCTTTCAGCAGATCAGCTCCCTGCGGCA > 1:224603/1‑71CCCCAGCCAGTATTGCGTCATGGTTTATTGCACCTCATCCACGGCTTTCAGCAGATCAGATCCCTGCGGCA > 1:2946320/1‑71 CCCAGCCAGTATTGCGTCATGGTTTATTGCACCTCATCCACGGCTTTCAGAAGATCAGCTCCCTGCGGCAC < 1:4417196/71‑1 CAGCCAGTATTGCGTCATGGTTTATTGCACCTCATCCACGGCTTTCAGCAGATCAGCTCCCTGCGGCACAT > 1:2465291/1‑71 CAGCCAGTATTGCGTCATGGTTTATTGCACCTCATCCACGGCTTTCAGCAGATCAGCTCCCTGCGGCACAT < 1:831723/71‑1 CAGCCAGTATTGCGTCATGGTTTATTGCACCTCATCCACGGCTTTCAGCAGATCAGCTCCCTGCGGCA < 1:2072032/68‑1 GTATTGCGTCATGGTTTATTGCACCTCATCCACGGCTTTCAGCAGATCAGCTCCCTGCGGCACAT < 1:2628929/65‑1 GCGTCATGGTTTATTGCACCTCATCCACGGCTTTCAGCAGATCAGCTCCCTGCGGCAC > 1:1410608/1‑58 TCATGGTTTATTGCACCTCATCCACGGCTTTCAGCAGATCAGCTCCCTGCGGCACATGTTTGTTAAAGATG < 1:5106415/71‑1 TATTGCACCTCATCCACGGCTTTCAGCAGATCAGCTCCCTGCGGCAC > 1:78003/1‑47 TTGCACCTCATCCACGGCTTTCAGCAGATCAGCTCCCTGCGGCACAT > 1:3471157/1‑47 CATCCACGGCTTTCAGCAGATCAGCTCCCTGCGGCACATGTTTGTTAAAGATGTG > 1:2004282/1‑55 TCAGCAGATCAGCTCCCTGCGGCACATGTTTGTTAAAGATGTG > 1:4945016/1‑43 ACATGTTTGTTAAAGATGTGCCGCAGGGAGCTGATCTGCTGAAAGCCGTGGA > 1:2886970/1‑52 CATGTTTGTTAAAGATGTGCCGCAGGGAGCTGATCTGCTGAAAGCCGTGGATGAGGTGCAATAAACCATGA > 1:4207862/1‑71 ATGTTTGTTAAAGATGTGCCGCAGGGAGCTGATCTGCTGAAAGCCGTGGATGAGGTGCAATAAACCATGAC > 1:636466/1‑71 CCCCAGCCAGTATTGCGTCATGGTTTATTGCACCTCATCCACGGCTTTCAGCAGATCAGCTCCCTGCGGCACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3893311‑3893384‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatGTTTGTTAAAGATGTGCCGCAGGGAGCTGATCTGCTGAAAGCCGTGGATGAGGTGCAATAAACCATGAC < AP009048/3893395‑3893327 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |