| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3884113 = | 82 (1.400) | 3 (0.060) | 3/92 | NT | 4.8% | coding (210/1539 nt) | aldB | aldehyde dehydrogenase B |
| ? | AP009048 | 3884143 = | 44 (0.830) | coding (240/1539 nt) | aldB | aldehyde dehydrogenase B | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCGGCAATCTTAAACAGAATCGCCGCACGATCCTGCACCGAGGTGTGCGCCCATTTATCTTTCACTTTGTGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3884187‑3884113‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaCACCTCGGTGCAGGATCGTGCGGCGATTCTGTTTAAGATTGCCGATCGAATGGAACAAAACCTCGAGCT > AP009048/3884143‑3884211 TCGGCAATCTTAAACAGAATCGCCGCACGATCCTGCACCGAGGTGTGCGCCCATTTATCTTTCACTTTGTG > 1:4405851/1‑71 GCAATCTTAAACAGAATCGCCGCACGATCCTGCACCGAGGTGTGCGCCCATTTATCTTTCACTTTGTGCG > 1:944758/1‑70 CAATCTTAAACAGAATCGCCGCACGATCCTGCACCGAGGTGTGCGCCCATTTATCTTTCACTTTGTGCGCA < 1:5359583/71‑1 CAATCTTAAACAGAATCGCCGCACGATCCTGCACCGAGGTGTGCGCCCATTTATCTTTCACTTTGTGCG > 1:4337307/1‑69 CAATCTTAAACAGAATCGCCGCACGATCCTGCACCGAGGTGTGCGCCCATTTATCTTTCACTTTGTGCG > 1:3755993/1‑69 TTAAACAGAATCGCCGCACGATCCTGCACCGAGGTGTGCGCCCATTTATCTTTCACTTTGTGC > 1:1236209/1‑63 ACAGAATCGCCGCACGATCCTGCACCGAGGTGTGCGCCCATTTATCTTTCACTTTGTGCG < 1:2334572/60‑1 CACCGAGGTGTGCGCCCATTTATCTTTCACTTTGTGC < 1:3490442/37‑1 GCGCCCATTTATCTTTCACTTTGTGCGCACACCTCGGTGCAGGATCGTGCGGCGATTCT > 1:1965942/1‑59 CGCCCATTTATCTTTCACTTTGTGCGCACACCTCGGTGCAGGATCGTGCGGCGATTCTGTTTAAGATTG > 1:3368945/1‑69 CCCATTTATCTTTCACTTTGTGCGCACACCTCGGTGCAGGA > 1:5261431/1‑41 GCGCACACCTCGGTGCAGGATCGTGCGGCGATTCTGTTTA > 1:1408495/1‑40 GCACACCTCGGTGCAGGATCGTGCGGCGATTCTGTTTAAGATTGCCGATCGAATGGAACAAAACCTCGAGC < 1:4223872/71‑1 GCACACCTCGGTGCAGGATCGTGCGGCGATTCTGTTTAAGATT > 1:1931407/1‑43 CACACCTCGGTGCAGGATCGTGCGGCGATTCTGTTTAAGATTGCCGATCGAATGGAACAAAACCTCGAGCT > 1:3912100/1‑71 CACACCTCGGTGCAGGATCGTGCGGCGATTCTGTTTAAGATTGCAGATCGAATGGAACAAAACCTCGAGCT < 1:1204996/71‑1 ACACCTCGGTGCAGGATCGTGCGGCGATTCTGTTTAAGATTGCCGATCGAATGGAACAAAACC < 1:1419729/63‑1 TCGGCAATCTTAAACAGAATCGCCGCACGATCCTGCACCGAGGTGTGCGCCCATTTATCTTTCACTTTGTGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3884187‑3884113‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaCACCTCGGTGCAGGATCGTGCGGCGATTCTGTTTAAGATTGCCGATCGAATGGAACAAAACCTCGAGCT > AP009048/3884143‑3884211 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |