| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,256,801 | T→C | 5.4% | K79K (AAA→AAG) | rpoC ← | RNA polymerase, beta prime subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,256,801 | 0 | T | C | 5.4% | 212.7 / 3.8 | 74 | K79K (AAA→AAG) | rpoC | RNA polymerase, beta prime subunit |
| Reads supporting (aligned to +/- strand): ref base T (40/30); new base C (2/2); total (42/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.70e-01 | |||||||||||
CATACGCTCACGGCGTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCAAAGATACGGGCGCAGAAAA > Exported/2256732‑2256871 | cATACGCTCACGGCGTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGtt > 1:1164304/1‑71 (MQ=255)cATACGCTCACGGCGTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGtt > 1:2926021/1‑71 (MQ=255) tACGCTCACGGCGTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGttt > 1:2054233/1‑70 (MQ=255) tACGCTCACGGCGTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGttt > 1:3580205/1‑70 (MQ=255) tACGCTCACGGCGTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGttt > 1:4248753/1‑70 (MQ=255) gCTCACGGCGTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGttt < 1:1548305/67‑1 (MQ=255) tCACGGCGTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGgc > 1:4181056/1‑70 (MQ=255) aCGGCGTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGgcgc < 1:4425974/70‑1 (MQ=255) aCGGCGTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCt > 1:2324267/1‑71 (MQ=255) aCGGCGTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCt > 1:3452429/1‑71 (MQ=255) aCGGCGTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCt > 1:518503/1‑71 (MQ=255) gTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTAc < 1:2703991/71‑1 (MQ=255) tACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTg < 1:1798711/67‑1 (MQ=255) cTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTa > 1:956842/1‑71 (MQ=255) tttAGTCTGGGTCACTTTAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCa > 1:4294430/1‑56 (MQ=255) tttAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCa > 1:3968336/1‑56 (MQ=255) tttAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCa > 1:2420958/1‑56 (MQ=255) tAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTttacttac < 1:2455670/69‑1 (MQ=255) tAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTa > 1:1893311/1‑68 (MQ=255) tAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTa > 1:3504351/1‑68 (MQ=255) tAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTa > 1:2355965/1‑68 (MQ=255) tAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTAc < 1:2859699/69‑1 (MQ=255) tAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCg > 1:2964687/1‑71 (MQ=255) tAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCg > 1:833099/1‑71 (MQ=255) tAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACATACCg > 1:1261062/1‑71 (MQ=255) gTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGca < 1:4183438/71‑1 (MQ=255) tCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGcac < 1:2688547/71‑1 (MQ=255) tGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAg > 1:3574906/1‑71 (MQ=255) ggTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAg < 1:1342881/69‑1 (MQ=255) cACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACt > 1:465325/1‑71 (MQ=255) cACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACt > 1:2773609/1‑71 (MQ=255) aCTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTc > 1:4043579/1‑71 (MQ=255) cTTCGACGCCGCACTTTTCGCAGATCACGCCGCGGTGCTTCAGGCGCTTGTACTTGCCGCACAGGCATTCg > 1:4149514/1‑71 (MQ=255) cTTCGACGCCGCACTTTTCGCAGATCACGCCGCGGTGCTTCAGGCGCTTGTACTTGCCGCACAGGCATTCg > 1:3602722/1‑71 (MQ=255) ttCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACt < 1:3063959/53‑1 (MQ=255) ttCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGca < 1:2852610/60‑1 (MQ=255) ttCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGca < 1:4205750/60‑1 (MQ=255) ttCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGca < 1:292678/60‑1 (MQ=255) cAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACt > 1:3805605/1‑51 (MQ=255) cAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACt > 1:2822008/1‑51 (MQ=255) cAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACt > 1:2084539/1‑51 (MQ=255) aaaCGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCTCTTGTACt > 1:4313246/2‑51 (MQ=255) gccgcACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCtt < 1:3641170/71‑1 (MQ=255) gcACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTa < 1:267855/71‑1 (MQ=255) gcACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTa < 1:2852369/71‑1 (MQ=255) gcACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTa < 1:721655/71‑1 (MQ=255) cACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTAc < 1:155797/71‑1 (MQ=255) aCTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTAc > 1:3581393/1‑41 (MQ=255) aCTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTAc > 1:4218799/1‑41 (MQ=255) aCTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTAc > 1:3431304/1‑41 (MQ=255) aCTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTAc > 1:1675775/1‑41 (MQ=255) aCTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTAcc < 1:3956610/71‑1 (MQ=255) cTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCttt < 1:4324115/66‑1 (MQ=255) ttCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGcac < 1:2212390/48‑1 (MQ=255) tctcACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGc > 1:1482223/1‑45 (MQ=255) tctcACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTa > 1:3535335/1‑66 (MQ=255) tctcACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTa > 1:634881/1‑66 (MQ=255) ctcACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCgga > 1:2215632/1‑69 (MQ=255) ctcACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCgg < 1:3844695/69‑1 (MQ=255) acaGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTAc > 1:2744608/1‑63 (MQ=255) acaGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCa > 1:1594818/1‑70 (MQ=255) caGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGccc < 1:235584/68‑1 (MQ=255) caGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCaaa < 1:4395260/71‑1 (MQ=255) aGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTa > 1:2945820/1‑60 (MQ=255) aGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTa > 1:240790/1‑60 (MQ=255) aGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCaaa < 1:1589896/70‑1 (MQ=255) gATGACGCCACGGTGTTTCAGGCGCTTGTACTTAc > 1:3654770/1‑35 (MQ=255) gATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCa > 1:39560/1‑67 (MQ=255) gATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCa > 1:2587188/1‑67 (MQ=255) gATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCa > 1:2564452/1‑67 (MQ=255) gATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCAAAGa < 1:1145780/71‑1 (MQ=255) gATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCAAAGa < 1:2046605/71‑1 (MQ=255) gATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCAAAGa < 1:2041196/71‑1 (MQ=255) aTGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTa > 1:963957/1‑58 (MQ=255) aTGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTa > 1:2376058/1‑58 (MQ=255) cACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCTTAATCTTTTACCGGCCCAAAGATACGGgcg < 1:1673729/71‑1 (MQ=255) cACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCAAAGATACGGgcg < 1:1521080/71‑1 (MQ=255) aCGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTa < 1:3575386/42‑1 (MQ=255) cGGTGCTTCAGGCGCTTGTACTTGCCGCACAGGCATTCGTAGTCCTTGATCGGGCCAAAGATCTTGGCGCa < 1:1482452/71‑1 (MQ=255) ggTGCTTCAGGCGCTTGTACTTGCCGCACAGGCATTCGTAGTCCTTGATCGGGCCAAAGATCTTGGCGCa < 1:3895856/70‑1 (MQ=255) tgtTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCAAAGATACGGGCGCAGaa < 1:891174/71‑1 (MQ=255) tgtTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCAAAGATACGGGCGCAGaa < 1:3884487/71‑1 (MQ=255) tttCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCAAAGATACGGGCGCAGaaaa < 1:2673864/71‑1 (MQ=255) tttCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCAAAGATACGGGCGCAGaaa < 1:4409524/70‑1 (MQ=255) | CATACGCTCACGGCGTACTTTAGTCTGGGTCACTTCAACGCCGCACTTCTCACAGATGACGCCACGGTGTTTCAGGCGCTTGTACTTACCGCACAGGCACTCGTAATCTTTTACCGGCCCAAAGATACGGGCGCAGAAAA > Exported/2256732‑2256871 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |