| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4528143 = | 40 (0.710) | 3 (0.060) | 3/84 | NT | 8.3% | coding (632/1968 nt) | yjhG | predicted dehydratase |
| ? | AP009048 | 4528168 = | 33 (0.710) | coding (607/1968 nt) | yjhG | predicted dehydratase | |||||
GGCGGCGCGACGCTGCCCGCAAAGGATGGAGAAGACAACGGCAAGGTGCAAACCATTGGCGCACGCTTCGCCAATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4528219‑4528143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaatggTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTCGCGCCGCCGGGGACCAGCACGGTTGC > AP009048/4528168‑4528237 GGCGGCGCGACGCTGCCCGCAAAGGATGGAGAAGACAACGGCAAGGTGCAAACCATTGGCGCACGCTTCGC > 1:685028/1‑71 GCGGCGCGACGCTGCCCGCAAAGGATGGAGAAGACAACGGCAAGGTGCAAACCATTGGCGCACGCTTCGCC < 1:2553639/71‑1 CGGCGCGACGCTGCCCGCAAAGGATGGAGAAGACAACGGCAAGGTGCAAACCATTGGCGCACGCTTCGCCA < 1:4913518/71‑1 GGCGCGACGCTGCCCGCAAAGGATGGAGAAGACAACGGCAAGGTGCAAACCATTGGCGCACGCTTCGCCAA > 1:2346738/1‑71 GGCGCGACGCTGCCCGCAAAGGAAGGAGAAGACAACGGCAAGGTGCAAACCATTGGCGCACGCTTCGCCAA > 1:2539149/1‑71 GCGACGCTGCCCGCAAAGGATGGAGAAGACAACGGCAAGGTGCAAACCATTGGCGCACGCTTCGCCAATG < 1:4557319/70‑1 GACGCTGCCCGCAAAGGATGGAGAAGACAACGGCAAGGTGCAAACCATTGGCGCACGCTTCGCCAAT < 1:3055975/67‑1 ACGCTGCCCGCAAAGGATGGAGAAGACAACGGCAAGGTGCAAACCATTGGCGCACGCTTCGCCAA > 1:4278866/1‑65 TGGAGAAGACAACGGCAAGGTGCAAACCATTGGCGCACGCTTCGCCAAT > 1:2248944/1‑49 GGCAAGGTGCAAACCATTGGCGCACGCTTCGCCAAT < 1:2263972/36‑1 CATTGTCGCACGCTTCGCCAATGGTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCG < 1:3026083/59‑1 CATTGGCGCACGCTTCGCCAATGGTTTGCACCTTGCCGTTGTCTTCTCCA < 1:4935453/50‑1 TTGGCGCACGCTTCGCCAATGGTTTGCACCTTGCCGTTGTCTTCTCCATC > 1:4125257/1‑50 CGCCAATGGTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTCGCGCCGCCGGGGACCAG > 1:1718830/1‑70 CCAATGGTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTCGCGCCGCCGGGGACCAGCA < 1:4480304/70‑1 AATGGTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTCGCGCCGCCGGGGACCAGCACGG > 1:4698145/1‑71 ATGGTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTCGCGCCGCCGGGGACCAGCACGGT < 1:104815/71‑1 ATGGTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTCGCGCCGCCGGGGACCAGCACGGT > 1:4842493/1‑71 ATGGTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCG < 1:4388816/46‑1 ATGGTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAG > 1:2392030/1‑44 TGGTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTCGCGCCGCCGGGGACCAGCACGGTT > 1:2708871/1‑71 TGGTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTCGCGCCGCCGGGGACCAGCACGGTT > 1:5106735/1‑71 GGTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTCGCGCCGCCGGGGACCAGCACGGTTG > 1:3209466/1‑71 GGTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTC > 1:311478/1‑46 GTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTCGCGCCGCCGGGGACCAGCACGGTTGC < 1:4314415/71‑1 GTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTCGCGCCGCCGGGGACCAGCACGGTTGC < 1:1600640/71‑1 GTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTCGCGCCGCCGGGGACCAGCAC < 1:4394878/65‑1 GGCGGCGCGACGCTGCCCGCAAAGGATGGAGAAGACAACGGCAAGGTGCAAACCATTGGCGCACGCTTCGCCAATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4528219‑4528143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaatggTTTGCACCTTGCCGTTGTCTTCTCCATCCTTTGCGGGCAGCGTCGCGCCGCCGGGGACCAGCACGGTTGC > AP009048/4528168‑4528237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |