New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	4006292 =	58 (1.030)	3 (0.060)	3/94	NT	5.9%	coding (336/1239 nt)	yhiL	hypothetical protein
	?	AP009048	4006323 =	42 (0.810)					coding (367/1239 nt)	yhiL	hypothetical protein

TAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/4006365‑4006292 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtctCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTATTTTATTAATTCCTCTGGAGATAA  >  AP009048/4006323‑4006384                                                                                                                                          TAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTG                                                                   >  1:2652143/1‑71   AAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGT                                                                  <  1:1407868/70‑1                  TTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGT                                                                  >  1:2465166/1‑55                  TTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTG                                                                   <  1:3875990/54‑1                  TTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTG                                                                   <  1:860329/54‑1                            CAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCT                                                                >  1:3546503/1‑47                                            AGACGATAATTTTAACACATGGTTATTGTCTCCCATTACCGTTACTG                                                <  1:3531018/47‑1                                                GATAATTTTAACACATGGTTATTGTCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTAT                         <  1:4533398/66‑1                                                   AATTTTAACACATGGTTATTGTCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTATTTTATTAA                 >  1:3155641/1‑71                                                                        TCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTATTTTATTAAT                <  1:2348589/51‑1                                                                        TCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTATTTTATT                   <  1:2254675/48‑1                                                                        TCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTATTT                       >  1:2152588/1‑44                                                                          TCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTATTTTATTAATTCCTCTGGAGATAA  <  1:3255879/63‑1                                                                                                                                          TAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/4006365‑4006292 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtctCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTATTTTATTAATTCCTCTGGAGATAA  >  AP009048/4006323‑4006384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.