New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 3750590	0 (0.000)	46 (0.890)	34/94	NT	100%	intergenic (‑104/‑69)	tnaA/insH	tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein
	?	AP009048	3751790 =	0 (0.000)					intergenic (+151/+116)	insH/tnaC	IS5 element protein/tryptophanase leader peptide

CCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/3750522‑3750590 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACA  >  AP009048/3751790‑3751859                                                                                                                                             CCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAA                                                                       <  1:4771417/70‑1         TATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAA                                                              >  1:1044881/1‑71         TATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAA                                                              >  1:4986980/1‑71           TTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAAT                                                             >  1:4921826/1‑70           TTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAAT                                                             >  1:4047464/1‑70           TTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAA                                                                       <  1:3703239/60‑1            TACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAA                                                                       <  1:3203562/59‑1             ACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAA                                                           <  1:791640/70‑1             ACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAG                                                                  >  1:1952590/1‑63                 CTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTTAATAAACG                                                        <  1:586801/69‑1                  TGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGA                                                       >  1:1426874/1‑69                  TGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAAC                                                                     >  1:3709454/1‑55                    CTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGA                                                       <  1:1032216/67‑1                      ATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGAT                                                  >  1:365094/1‑70                      ATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATA                                                            <  1:4522312/60‑1                         CCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACC                                              >  1:3035345/1‑71                          CGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCT                                             <  1:2354281/71‑1                           GATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTT                                            >  1:1573023/1‑71                           GATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTT                                            <  1:3375577/71‑1                            ATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTT                                           >  1:2504108/1‑71                               AATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGC                                         >  1:4445788/1‑70                                ATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAA                                       <  1:3678120/71‑1                                ATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAA                                       <  1:79376/71‑1                                ATTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAA                                       <  1:4746502/71‑1                                 TTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGTAAA                                      <  1:5009052/71‑1                                 TTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAA                                      <  1:3981643/71‑1                                 TTCGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAA                                      <  1:3315813/71‑1                                   CGCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAA                                     <  1:626640/70‑1                                    GCCAGATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCA                                        >  1:3786637/1‑66                                         ATATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAAC                                                         >  1:2495368/1‑44                                           ATATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAAT                             >  1:3045019/1‑70                                            TATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTA                           <  1:995289/71‑1                                            TATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATT                            <  1:1510107/70‑1                                            TATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAG                                                    <  1:232150/46‑1                                            TATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAG                                                    <  1:77130/46‑1                                             ATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTA                           <  1:2533764/70‑1                                             ATATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATT                            >  1:345562/1‑69                                              TATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCT                                             <  1:4025805/51‑1                                              TATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGAT                                                  >  1:1143916/1‑46                                               ATGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATT                            >  1:4709736/1‑67                                               ATGCAAGCACCATCATTTACTAAAACAAGTAAATAAA                                                          >  1:4501106/1‑37                                                TGCAAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAA                                <  1:3507139/62‑1                                                   AAGCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATA                      >  1:4837235/1‑69                                                     GCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAG                   >  1:4034937/1‑70                                                     GCACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAG                   >  1:1664550/1‑70                                                       ACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGC                  >  1:3228146/1‑69                                                       ACCATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAA                              >  1:1630108/1‑57                                                          ATCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAAC              >  1:508377/1‑70                                                           TCATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTA                           >  1:802388/1‑56                                                            CATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAA            <  1:2588115/70‑1                                                             ATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAA           >  1:1255439/1‑70                                                             ATTTACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAA                                     <  1:36617/44‑1                                                                TACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAA           >  1:4092678/1‑67                                                                TACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAA           >  1:4924588/1‑67                                                                 ACTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAA           >  1:1611155/1‑66                                                                  CTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGAT      <  1:2490955/70‑1                                                                   TAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGA       <  1:3499769/68‑1                                                                    AAAACAAGAAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCA    >  1:3330853/1‑70                                                                     AAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACA  >  1:1163134/1‑71                                                                     AAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACA  >  1:293766/1‑71                                                                     AAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACA  >  1:4051130/1‑71                                                                     AAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACA  >  1:172000/1‑71                                                                     AAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGA                        <  1:4065644/49‑1                                                                                                                                             CCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/3750522‑3750590 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACA  >  AP009048/3751790‑3751859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.