| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3674466 = | 104 (1.850) | 5 (0.100) | 3/92 | NT | 5.8% | coding (1539/2022 nt) | rep | DNA helicase and single‑stranded DNA‑dependent ATPase |
| ? | AP009048 | 3674494 = | 69 (1.360) | coding (1511/2022 nt) | rep | DNA helicase and single‑stranded DNA‑dependent ATPase | |||||
TACGAAACATCGCCCAGCCCGAAAGCCGCCGAAATGCGCATGAAGAACGTCAACCAACTGTTTAGCTGGATGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3674540‑3674466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacgTTCTTCATGCGCATTTCGGCGGCTTTCGGGCTGGGCGATGTTTCGTACAGCCAGGATTCATAATCCATGC > AP009048/3674494‑3674563 TACGAAACATCGCCCAGCCCGAAAGCCGCCGAAATGCGCATGAAGAACGTCAACCAACTGTTTAGCTGGAT < 1:1067966/71‑1TACGAAACATCGCCCAGCCCGAAAGCCGCCGAAATGCGCATGAAGAACGTCAACCAACTGTTTAGCTGGAT > 1:2457408/1‑71 ACGAAACATCGCCCAGCCCGAAAGCC‑CCGAAATGCGCATGAAGAACGTCAACCAACTGTTTAGCTGGATGA > 1:4528706/1‑71 CGAAACATCGCCCAGCCCGAAAGCCGCCGAAATGCGCATGAAGAACGTCAACCAACTGTTTAGCTGGATGA > 1:4649623/1‑71 CGAAACATCGCCCAGCCCGAAAGCCGCCGAAATGCGCATGAAGAACGTCAACCAACTGTTTAGCTGGATGA > 1:2443555/1‑71 GAAACATCGCCCAGCCCGAAAGCCGCCGAAATGCGCATGAAGAACGTCAACCAACTGTTTAGCTGGATGAC > 1:2767685/1‑71 AAACATCGCCCAGCCCGAAAGCCGCCGAAATGCGCATGAAGAACGTCAACCAACTGTTTAGCTGGAT < 1:2722390/67‑1 AACATCGCCCAGCCCGAAAGCCGCCGAAATGCGCATGAAGAACGTCAACCAACTGTTTAGCTGGATGACG > 1:180904/1‑70 ACATCGCCCAGCCCGAAAGCCGCCGAAATGCGCATGAAGAACGTCAACCAACTGTTTAGCTGGATGACG > 1:3883570/1‑69 ACATCGCCCAGCCCGAAAGCCGCCGAAATGCGCATGAAGAACGTCAACCAACTGTTTAGCTGGATGACG > 1:2260482/1‑69 GCCCAGCCCGAAAGCCGCCGAAATGCGCATGAAGAACGTCAACCAACTGTTTAGCTGGATGACG > 1:1826465/1‑64 TCAACCAACTGTTTAGCTGGATGACGTTCTTCATGCGCATTTCGGCGGCTTTC < 1:298582/53‑1 CAACCAACTGTTTAGCTGGATGACGTTCTTCATGCGCATTTCGG > 1:2288458/1‑44 AACCAACTGTTTAGCTGGATGACGTTCTTCATGCGCATTTCGGCGGCTTTCGc > 1:80276/1‑52 AACCAACTGTTTAGCTGGATGACGTTCTTCATGCGCATTTCGGCGGCTTTCGG > 1:3702731/1‑53 AACCAACTGTTTAGCTGGATGACGTTCTTCATGCGCATTT > 1:3708667/1‑40 GACGTTCTTCATGCGCATTTCGGCGGCTTTCGGGCTGGGCGATGTTTCGTACAGCCAGGATTCATAATCC < 1:3995970/70‑1 ACGTTCTTCATGCGCATTTCGGCGGCTTTCGGGCTGGGCGATGTTTCGTACAGCCAGGATTCATAATCCA < 1:2482196/70‑1 CGTTCTTCATGCGCATTTCGGCGGCTTTCGGGCTGG‑‑GATGTTTCGTACAGCCAGGATTCATAATCCATGC > 1:4272882/1‑70 TACGAAACATCGCCCAGCCCGAAAGCCGCCGAAATGCGCATGAAGAACGTCAACCAACTGTTTAGCTGGATGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3674540‑3674466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacgTTCTTCATGCGCATTTCGGCGGCTTTCGGGCTGGGCGATGTTTCGTACAGCCAGGATTCATAATCCATGC > AP009048/3674494‑3674563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |