| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3634827 = | 82 (1.460) | 4 (0.080) | 4/86 | NT | 6.7% | coding (429/951 nt) | corA | magnesium/nickel/cobalt transporter |
| ? | AP009048 | 3634851 = | 43 (0.910) | coding (405/951 nt) | corA | magnesium/nickel/cobalt transporter | |||||
CCCGTAGCCAGTCGATGGTAGACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCGAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3634900‑3634827‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgaacagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGACGA > AP009048/3634851‑3634920 CCCGTAGCCAGTCGATGGTAGACGTTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCGAA < 1:2082487/71‑1CCCGTAGCCAGTCGATGGTAGACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCGAA > 1:2125992/1‑71 GTAGCCAGTCGATGGTAGACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCGAACAG > 1:2381235/1‑71 GTCGATGGTAGACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAAT > 1:4450394/1‑57 CGATGGTAGACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCGAAC < 1:1802921/60‑1 ATGGTAGACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCG < 1:4844757/55‑1 GGTAGACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCGAACA < 1:2901332/57‑1 GGTAGACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCGAACA < 1:2328575/57‑1 GTAGACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCGAACAG < 1:2621785/57‑1 GTAGACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCGAACA < 1:1200065/56‑1 TAGACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCGAACA < 1:1193962/55‑1 TAGACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAAT > 1:4423982/1‑49 GACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATC > 1:765572/1‑48 TAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCGAAC < 1:3276476/47‑1 TACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCGAACA < 1:1783015/41‑1 GTTGCTGCTGGATCTGTTCGAAACCAAAATCGAACA < 1:3811156/36‑1 TTGCTGCTGGATCTGTTCGAAACCAAAATCGAACAG < 1:1831449/36‑1 CTGTTCGAAACCAAAATCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTAC > 1:685996/1‑71 GTTCGAAACCAAAATCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTC < 1:5022403/52‑1 TTCGAAACCAAAATCGAACAGATCCAGCAGCAACTCGTAGGC < 1:2163318/42‑1 ACCAAAATCGAACAGATCCAGCAGCAACTCGTAGGCGTTACC > 1:1161907/1‑42 TCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATA > 1:2615048/1‑71 TCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATA > 1:1642767/1‑71 TCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATA > 1:3075430/1‑71 TCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATA > 1:3125835/1‑71 TCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATA > 1:1342703/1‑71 TCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACG > 1:2624775/1‑56 TCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGA > 1:4089771/1‑47 TCGAACAGATCCACCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATA > 1:910679/1‑71 CGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGCCTGGCTACGGGCACGCATACGATA > 1:2730853/1‑70 AACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACA < 1:1612951/70‑1 ACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGA > 1:2080531/1‑71 ACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACA < 1:2070905/69‑1 ACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTA < 1:1594784/36‑1 CAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGAC < 1:4575913/71‑1 CAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGG > 1:3249616/1‑53 CAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTAC > 1:558768/1‑50 CAGATCCAGCAGCAACTCGCAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGAC < 1:2756089/71‑1 AGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGACG < 1:3390729/71‑1 GATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGACGA < 1:2630680/71‑1 CCCGTAGCCAGTCGATGGTAGACGGTAACGCCTACGAGTTGCTGCTGGATCTGTTCGAAACCAAAATCGAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3634900‑3634827‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgaacagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGACGA > AP009048/3634851‑3634920 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |