| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3124567 | 62 (1.100) | 5 (0.100) | 3/92 | NT | 8.0% | coding (612/1053 nt) | glcE | glycolate oxidase FAD binding subunit |
| ? | AP009048 | = 3124578 | 59 (1.160) | coding (601/1053 nt) | glcE | glycolate oxidase FAD binding subunit | |||||
CACGCGCTGCTTTTACCGATCCTTCGCCGCCCTCAAGGCGGATCCACAACGCATTGTCGAAGTAACATAAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3124494‑3124567‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccaTTACCCATTAGTGGCTTATGTTACTTCGACAATGCGTTGTGGATCCGCCTTGAGGGCGGCGAAGGAT < AP009048/3124578‑3124512 CACGCGCTGCTTTTACCGATCCTTCGCCGCCCTCAAGGCGGATCCACAACGCATTGTCGAAGTAACATAAG > 1:408203/1‑71 TTTACCGATCCTTCGCCGCCCTCAAGGCGGATCCACAACGCATTGTCGAAGTAACATAAGC < 1:3506536/61‑1 CGATCCTTCGCCGCCCTCAAGGCGGATCCACAACGCATTGTCGAAGTAACATAAGC < 1:3477265/56‑1 CCCTCAAGGCGGATCCACAACGCATTGTCGAAGTAACATAAGCCATTACCCATTAGTGGC > 1:2567712/1‑60 CCCTCAAGGCGGATCCACAACGCATTGTCGAAGTAACATAAGCCATTACCCATTAGTGGC > 1:3017683/1‑60 CTCAAGGCGGATCCACAACGCATTGTCGAAGTAACATAAGCCA < 1:1104529/43‑1 CTCAAGGCGGATCCACAACGCATTGTCGAAGTAACATAAGC > 1:506684/1‑41 TCAAGGCGGATCCACAACGCATTGTCGAAGTAACATTACCCATTA > 1:3750047/1‑45 TCAAGGCGGATCCACAACGCATTGTCGAAGTAACATAAGCCA > 1:84681/1‑42 GATCCACAACGCATTGTCGAAGTAACATAAGCCATTACCCATTAGTGGCT < 1:4541224/50‑1 CAACGCATTGTCGAAGTAACATAAGCCATTACCCATTAGTGGCTT > 1:3831408/1‑45 CAACGCATTGTCGAAGTAACATAAGCCATTACCCATTAGTGGCTT > 1:492146/1‑45 AGCCATTACCCATTAGTGGCTTATGTTACTTCGACAATGCGTTGTGGATCCGCCTTGAGGGCGGCGAAGGA < 1:2813333/71‑1 AGCCATTACCCATTAGTGGCTTATGTTACTTCGACAATGCGTTGTGGATCCGCCTTGAGGGCGGCGAAGGA > 1:3603259/1‑71 AGCCATTACCCATTAGTGGCTTATGTTACTTCGACAATGCGTTGTGGAT > 1:1262140/1‑49 tCCATTACCCATTAGTGGCTTATGTTACTTCGACAATGCGTTGTGGATCCGCCTTGAGGGCGGCGAAGGAT > 1:1455526/2‑71 CACGCGCTGCTTTTACCGATCCTTCGCCGCCCTCAAGGCGGATCCACAACGCATTGTCGAAGTAACATAAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3124494‑3124567‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccaTTACCCATTAGTGGCTTATGTTACTTCGACAATGCGTTGTGGATCCGCCTTGAGGGCGGCGAAGGAT < AP009048/3124578‑3124512 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |