| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3037146 | 48 (0.850) | 5 (0.100) | 4/88 | NT | 10.8% | coding (333/711 nt) | dsbC | protein disulfide isomerase II |
| ? | AP009048 | = 3037153 | 41 (0.840) | coding (326/711 nt) | dsbC | protein disulfide isomerase II | |||||
TGATCCCCAGCGCGTTGTAGTCTGCCATTTGCTCATGCAGTTTGTGGCAGTAACCACAGGTAATATCAGTAAACACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3037070‑3037146‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacacgTCATCACCGTGTTTACTGATATTACCTGTGGTTACTGCCACAAACTGCATGAGCAAATGGCAGACTAC < AP009048/3037153‑3037086 TGATCCCCAGCGCGTTGTAGTCTGCCATTTGCTCATGCAGTTTGTGGCAGTAACCACAGGTAATATCAGTA < 1:3617071/71‑1 CCCCAGCGCGTTGTAGTCTGCCATTTGCTCATGCAGTTTGTGGCAGTAACCACAGGTAATATCAGTAAACA > 1:822177/1‑71 GCGCGTTGTAGTCTGCCATTTGCTCATGCAGTTTGTGGCAGTAACCACAGGTAATATCAGTAAACACG < 1:1862015/68‑1 TAGTCTGACATTTGCTCATGCAGTTTGTGGCAGTAACCACAGGTAATATCAGTAAACA < 1:1263982/58‑1 GTCTGCCATTTGCTCATGCAGTTTGTGGCAGTAACCACAGGTAATATCAGTAAACACG > 1:4663529/1‑58 TCTGCCATTTGCTCATGCAGTTTGTGGCAGTAACCACAGGTAATATCAGTAAACACGTCATCACCGTGTTT < 1:115318/71‑1 CTGCCATTTGCTCATGCAGTTTGTGGCAGTAACCACAGGTAATATCAGTAAAC > 1:4143021/1‑53 TGCCATTTGCTCATGCAGTTTGTGGCAGTAACCACAGGTAATATCAGTAAACACG < 1:3724496/55‑1 ATGCAGTTTGTGGCAGTAACCACAGGTAATATCAGTAAACACGTCATCACCGTGTT < 1:1948773/56‑1 TGCAGTTTGTGGCAGTAACCACAGGTAATATCAGTAAACACGTCATCACCGT < 1:1716648/52‑1 GCAGTTTGTGGCAGTAACCACAGGTAATATCAGTAA < 1:2598346/36‑1 CAGTTTGTGGCAGTAACCACAGGTAATATCAGTAAACA > 1:3045955/1‑38 TTTGTGGCAGTAACCACAGGTAATATCAGTAAACACGTCATCACCGTGT < 1:1872878/49‑1 TTTGTGGCAGTAACCACAGGTAATATCAGTAAACACGTCATCACCGTGT < 1:2355177/49‑1 AAACACGTCATCACCGTGTTTACTGATATTACCTGTGGTTACTGCCACAAACTGCATGAGCA < 1:641949/62‑1 AACACGTCATCACCGTGTTTACTGATATTACCTGTGGTTACTGCCACAAACTGCATGAGCAAATGGCAGAC > 1:2677892/1‑71 AACACGTCATCACCGTGTTTACTGATATTACCTGTGGTTACTGCCACAAACTGCATGAGCAAATGG > 1:843215/1‑66 CACGTCATCACCGTGTTTACTGATATTACCTGTTGTTACTGCCACAAACTGCATGAGCAAATGGCAGACTA < 1:4989444/71‑1 CACGTCATCACCGTGTTTACTGATATTACCTGTGGTTACTGCCACAAACTGCATGAGCAAATGGCAGACTA < 1:1697198/71‑1 CACGTCATCACCGTGTTTACTGATATTACCTGTGGTTACTGCCA > 1:902925/1‑44 ACGTCATCACCGTGTTTACTGATATTACCTGTGGTTACTGCCACAAACTGCATGAGCAAATGGCAGACTAC < 1:3300216/71‑1 ACGTCATCACCGTGTTTACTGATATTACCTGTGGTTACTGCCACAAACTGCATGAGCAAATGGCAGACTAC < 1:1148206/71‑1 ACGTCATCACCGTGTTTACTGATATTACCTGTGGTTACTGCCACAAACTGCATGA > 1:2110643/1‑55 TGATCCCCAGCGCGTTGTAGTCTGCCATTTGCTCATGCAGTTTGTGGCAGTAACCACAGGTAATATCAGTAAACACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3037070‑3037146‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacacgTCATCACCGTGTTTACTGATATTACCTGTGGTTACTGCCACAAACTGCATGAGCAAATGGCAGACTAC < AP009048/3037153‑3037086 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |