| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2724856 = | NA (NA) | 3 (0.060) | 3/90 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA |
| ? | AP009048 | 2724880 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA | |||||
GCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2724931‑2724856‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgatTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCT > AP009048/2724880‑2724948 GCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 1:4625409/71‑1GCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 1:340572/71‑1GCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 1:1477419/71‑1 CCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC < 1:2626009/71‑1 CCGAAGCTG‑TTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT < 1:2579094/71‑1 CGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT < 1:1157107/71‑1 CGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 1:520573/1‑71 AAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG < 1:1487682/70‑1 AAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG < 1:2537276/70‑1 AGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 1:513225/71‑1 GCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA > 1:3566545/1‑69 TGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT < 1:4928706/65‑1 TGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT < 1:1701208/65‑1 TGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT < 1:4646954/65‑1 GCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA < 1:3726690/60‑1 AGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 1:1860071/54‑1 GAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG < 1:2332002/51‑1 GAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT > 1:1165952/1‑51 GAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT < 1:2570261/48‑1 AGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA > 1:4678240/1‑48 ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 1:3412577/1‑44 TTTCAGCCTGATACAGATTAAATCAGAACGCAGAGGCGGTCT < 1:2565012/42‑1 TCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT > 1:5051234/1‑43 TCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT > 1:1853492/1‑43 AGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT > 1:3574398/1‑36 TCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATC < 1:4698443/47‑1 TCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAA < 1:590976/45‑1 AGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAA < 1:2407818/41‑1 TCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTT > 1:4986529/1‑69 TCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTT > 1:4966669/1‑69 TCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAA > 1:2440344/1‑65 TCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAA > 1:3285744/1‑65 TCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC < 1:2608025/37‑1 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAG > 1:4991449/1‑71 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAG > 1:1098162/1‑71 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAG > 1:2638862/1‑71 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTT > 1:2107162/1‑68 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGC > 1:2972562/1‑42 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATC > 1:3885048/1‑39 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCA > 1:1060623/1‑37 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCA > 1:1054684/1‑37 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT > 1:444389/1‑35 TGATTTTATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGC > 1:4918145/1‑56 TGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGC > 1:498424/1‑71 TGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGC > 1:4075071/1‑56 TGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAA > 1:6047/1‑46 TGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATC > 1:4870242/1‑38 GATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCC > 1:4155694/1‑71 GATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTC < 1:4195791/52‑1 GATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTC < 1:4232489/52‑1 GATTTAATATGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAA > 1:4261369/1‑62 ATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCT < 1:5147530/71‑1 ATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCT < 1:5152734/71‑1 ATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCT < 1:4609464/71‑1 ATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGG > 1:1849895/1‑53 ATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTC > 1:3480772/1‑51 ATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGC > 1:5013689/1‑39 ATTTAATCTGTATCAGGATGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCT > 1:3495674/1‑71 TTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAA < 1:4375125/66‑1 TTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGT < 1:2356938/58‑1 TTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCAGCCAAA > 1:2605898/1‑42 GCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2724931‑2724856‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgatTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCT > AP009048/2724880‑2724948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |