New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	2675410 =	60 (1.070)	3 (0.060)	3/96	NT	5.3%	coding (72/999 nt)	yphD	predicted sugar transporter subunit
	?	AP009048	2675430 =	50 (0.940)					coding (52/999 nt)	yphD	predicted sugar transporter subunit

TGTCTGCTTCGTCATTACCATTGCCGCAGGGCAAGAGCGTCTCGCTCAAACAATTTGTCAGTCGCCATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2675480‑2675410 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAATGACGAAGCAGA  >  AP009048/2675430‑2675478                                                                                                                          TGTCTGCTTCGTCATTACCATTGCCGCAGGGCAAGAGCGTCTCGCTCAAACAATTTGTCAGTCGCCATATT                                                   <  1:209161/71‑1  GTCTGCTTCGTCATTACCATTGCCGCAGGGCAAGAGCGTCTCGCTCAAACAATTTGTCAGTCGCCATAT                                                    >  1:1350525/1‑69               TTACCATTGCCGCAGGGCAAGAGCGTCTCGCTCAAACAATTTGTCAGTCGCCATATT                                                   <  1:1039453/57‑1                                                AAACAATTTGTCAGTAGCCATATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAATGACGAAGC     <  1:2239633/70‑1                                                  ACAATTTGTCAGTCGCCATATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAATGACGAAGCAGA  >  1:3326505/1‑71                                                     ATTTGTCAGTCGCCATATTGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAATGACGAAGCA    >  1:2946312/1‑66                                                                       TGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAATGAC          >  1:3495497/1‑42                                                                                                                          TGTCTGCTTCGTCATTACCATTGCCGCAGGGCAAGAGCGTCTCGCTCAAACAATTTGTCAGTCGCCATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2675480‑2675410 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attGTTTGAGCGAGACGCTCTTGCCCTGCGGCAATGGTAATGACGAAGCAGA  >  AP009048/2675430‑2675478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.