| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2108326 | 20 (0.360) | 3 (0.060) | 3/88 | NT | 12.7% | coding (1038/1167 nt) | wbbH | O‑antigen polymerase |
| ? | AP009048 | = 2108333 | 24 (0.490) | coding (1031/1167 nt) | wbbH | O‑antigen polymerase | |||||
ATTTGTATCCAACTGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2108252‑2108326‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaatatTTTATTCATATTTTATTTATACCTTTTCTTTCATTTTTTATCATGAAAGCTTCATGACTAATATTAGCA < AP009048/2108333‑2108265 ATTTGTATCCAACTGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAA > 1:1567950/1‑70 CAACTGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAAT < 1:3667835/64‑1 AACTGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAA > 1:4784149/1‑60 CTGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATTTTATTCA > 1:3734508/1‑71 TATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATA < 1:81138/50‑1 ATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATATTTTATTCATATTT > 1:3962146/1‑61 GAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAA < 1:3829005/41‑1 AAAATGAAAGAAAAGGTATAAATAAAATATTTTATTCA > 1:1951895/1‑38 AAAATATTTTATTCATATTTTATTTATACCTTTTCTTTCATTTTTTATCATGAAAGCTTCATGACTAATAT > 1:2735378/1‑71 AAAATATTTTATTCATATTTTATTTATACCTTTTCTTTCATTTTTTATCATGAAAGCTTCATGACTAATAT < 1:2821199/71‑1 AATATTTTATTCATATTTTATTTATACCTTTTCTTTCATTTTTTATCATGAAAGCTTCATGACTAATATTA < 1:1060981/71‑1 ATATTTTATTCATATTTTATTTATACCTTTTCTTTCATTTTTTATCATGAAAGCTTCATGACTAATATTAG < 1:4933179/71‑1 TATTTTATTCATATTTTATTTATACCTTTTCTTTCATTTTTTATCATGAAAGCTTCATGACTAATATTAGC < 1:1150321/71‑1 ATTTTATTCATATTTTATTTATACCTTTTCTTTCATTTTTTATCATGAAAGCTTCATGACTAATATTA > 1:1160147/1‑68 TTTTATTCATATTTTATTTATACCTTTTCTTTCATTTTTTATCATGAAAGCTTCATGACTAATATTAGCA < 1:1744475/70‑1 TTTTATTCATATTTTATTTATACCTTTTCTTTCATTTTTTATCATGAAAGCTTCATGACTAAT < 1:4398963/63‑1 ATTTGTATCCAACTGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAAAGGTATAAATAAAATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2108252‑2108326‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaatatTTTATTCATATTTTATTTATACCTTTTCTTTCATTTTTTATCATGAAAGCTTCATGACTAATATTAGCA < AP009048/2108333‑2108265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |