| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1899549 | 48 (0.850) | 3 (0.060) | 3/92 | NT | 7.0% | coding (904/1365 nt) | sdaA | L‑serine deaminase I |
| ? | AP009048 | = 1899562 | 37 (0.730) | coding (917/1365 nt) | sdaA | L‑serine deaminase I | |||||
CGGTGGTCGTGTGGTAACTGCGCCAACCAACGGTGCCTGCGGTATCGTTCCGGCAGTGCTGGCTTACTATGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1899476‑1899549‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaccGATTCAATAAAGTGGTCATAGTAAGCCAGCACTGCCGGAACGATACCGCAGGCACCGTTGGTTGGCGCA < AP009048/1899562‑1899494 CGGTGGTCGTGTGGTAACTGCGCCAACCAACGGTGCCTGCGGTATCGTTCCGGCAGTGCTGGCTTACTAT > 1:3581312/1‑70 ACTGCGCCAACCAACGGTGCCTGCGGTATCGTTCCGGCAGTGCTGGCTTACTATG > 1:3668446/1‑55 CAACCAACGGTGCCTGCGGTATCGTTCCGGCAGTGCTGGCTTACTAT < 1:1226665/47‑1 AACGGTGCCTGCGGTATCGTTCCGGCAGTGCTGGCTTACTATGACCGATTCAATAAAGTGGTCATAGT < 1:5005014/68‑1 CGGTGCCTGCGGTATCGTTCCGGCAGTGCTGGCTTACTATGACCGATTCAATAAAGTGGT > 1:2707859/1‑60 CTGCGGTAGCGTGCCGGCAGTGCTGGCTTACTATG < 1:965216/35‑1 TATCGTTCCGGCAGTGCTGGCTTACTATGACCGATTCAATAAAGTGGTCA > 1:2432515/1‑50 GACCGATTCAATAAAGTGGTCATAGTAAGCCAGCACTGCCGGAACGATACCGCAGGCACCGT > 1:933552/1‑62 GACCGATTCAATAAAGTGGTCATAGTAAGCCAGCACTGCCGGAACGA < 1:1411821/47‑1 ACCGATTCAATAAAGTGGTCATAGTAAGCCAGCACTGCCGGAACGATACCGCAAGCAC > 1:1941408/1‑58 ACCGATTCAATAAAGTGGTCATAGTAAGCCAGCACTGCCGGAA > 1:1263033/1‑43 ACCGATTCAATAAAGTGGTCATAGTAAGCCAGCACTGCCGGA < 1:4645455/42‑1 aCGATTCAATAAAGTGGTCATAGTAAGCCAGCACTGCCGGAACGATACCGCAGGCACCGTTGGTTGGCGCA < 1:672615/70‑1 CCGATTCAATAAAGTGGTCATAGTAAGCCAGCACTGCCGGAACGATACCGCAGGCACCGTTGGTTGGCGCA < 1:2985857/71‑1 CCGATTCAATAAAGTGGTCATAGTAAGCCAGCACTGCCGGAACGATACCGCAGGCACCGTTGGTTGGCGCA < 1:3319058/71‑1 CGATTCAATAAAGTGGTCATAGTAAGCCAGCACTGCCGGAACGATACCGCAGGCACCGTTGGTTG > 1:3633892/1‑65 CGGTGGTCGTGTGGTAACTGCGCCAACCAACGGTGCCTGCGGTATCGTTCCGGCAGTGCTGGCTTACTATGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1899476‑1899549‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaccGATTCAATAAAGTGGTCATAGTAAGCCAGCACTGCCGGAACGATACCGCAGGCACCGTTGGTTGGCGCA < AP009048/1899562‑1899494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |