New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 163268720 (0.360)3 (0.060) 3/90 NT 12.6% intergenic (‑60/+29) ydfI/ydfJ predicted mannonate dehydrogenase/predicted transporter
?AP009048 = 1632703 24 (0.480)intergenic (‑76/+13) ydfI/ydfJ predicted mannonate dehydrogenase/predicted transporter

ATTATTTCCCATAACAATTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/1632616‑1632687
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcccTTCTCTTACCGGAGAGGGGATTTTTATTCATATAACAAA  <  AP009048/1632703‑1632665
                                                                                                               
ATTATTTCCCATAACAATTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATC                                           <  1:4434137/70‑1
 TTATTTCCCATAACAATTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCC                                         >  1:1793530/1‑71
                 TTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATC                                           <  1:3842395/53‑1
                         ATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCTTCTCTTACCGGAGAGGGGATTTT                 <  1:3358839/71‑1
                              AATATGGCAAGCTATATGTTTTGTTATATGAATAAAA                                              >  1:989146/1‑37
                                 ATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCCTTCTCTTACCGGAG                           >  1:4142911/1‑53
                                                     TTATATGAATAAAAATCCCTTCTCTTACCGGAGAGGG                       <  1:2419611/37‑1
                                                                      CCTTCTCTTACCGGAGAGGGGATTTTTATTCATAAAACAAA  <  1:1297131/41‑1
                                                                                                               
ATTATTTCCCATAACAATTCCTTAAATATAAATATGGCAAGCTATATGTTTTGTTATATGAATAAAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/1632616‑1632687
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcccTTCTCTTACCGGAGAGGGGATTTTTATTCATATAACAAA  <  AP009048/1632703‑1632665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.