| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1293974 | 32 (0.570) | 3 (0.060) | 3/84 | NT | 11.2% | intergenic (+32/+112) | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| ? | AP009048 | = 1293984 | 21 (0.450) | intergenic (+42/+102) | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS | |||||
CGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1293896‑1293974‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacggcgtCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACTTCTTAATGCCCATCTCTTCTTCA < AP009048/1293984‑1293915 CGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGA < 1:2156431/71‑1 GAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAA > 1:4578109/1‑71 ATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACG > 1:837106/1‑71 ATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACG < 1:5095052/71‑1 TTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGG > 1:4887088/1‑71 TTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACG > 1:4352100/1‑70 TAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCG > 1:119612/1‑71 GCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCAACGA < 1:115838/60‑1 GGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGT > 1:4452919/1‑48 GCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGC < 1:4578732/44‑1 GCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGG > 1:4800674/1‑43 AAGTAACATCCGTAGCGGTGTTATCCACGAAACGGCGTCGATTGCTCAACG < 1:4877622/51‑1 GTAACATCCGTATCGGTGTTATCCACGAAACGGCGTCGATTGCTCAACGCC > 1:3832904/1‑51 TCGGTGTTATCCACGAAACGGCGTCGATTGCTCAAC > 1:4577524/1‑36 AAACGGCGTCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACTTCTTAATGCCCATCT > 1:4359967/1‑71 AAACGGCGTCGATTGCTCAACGCCGTTTCGTGGATA > 1:3588467/1‑36 AACGGCGTCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACTTCTTAATGCCCATCTC < 1:1813208/71‑1 AACGGCGTCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACTTCTTAATGCCCATCT > 1:3797366/1‑70 ACGGCGTCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACTTCTTAATGCCCATCTCT > 1:2505300/1‑71 CGGCGTCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACTTCTTAATGCCCATCTCTT > 1:3610218/1‑71 CGGCGTCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACTTCTTAATGCCCATCTCTT > 1:4814695/1‑71 CGGCGTCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACT < 1:1523405/53‑1 GCGTCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACTTCTTA < 1:2320906/56‑1 GTCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGAT > 1:2999246/1‑43 GTCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGAT > 1:1683132/1‑43 GTCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGAT > 1:1037839/1‑43 TCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACTTCTTAATGCCCATCTCTTCTTCA < 1:3183362/71‑1 TCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACTTCTTAATGCCCATCTCTTCTTC < 1:2168715/70‑1 TCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACTTCTTAATGCCCATC < 1:3933013/62‑1 TCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACTTCT > 1:3690694/1‑51 CGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1293896‑1293974‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacggcgtCGATTGCTCAACGCCGTTTCGTGGATAACACCGATACGGATGTTACTTCTTAATGCCCATCTCTTCTTCA < AP009048/1293984‑1293915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |