| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 578470 | 49 (0.870) | 5 (0.100) | 5/94 | NT | 9.8% | coding (348/411 nt) | ybcV | hypothetical protein |
| ? | AP009048 | = 578482 | 47 (0.910) | coding (336/411 nt) | ybcV | hypothetical protein | |||||
CGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/578398‑578470‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagATATTACTATACCTTTGATAATTCATTACTATTTACTGAGAGCATTCAGAACACTACACAAATCTTTCCA < AP009048/578482‑578413 CGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCA < 1:4611100/70‑1 GAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGATATTACTATACCT < 1:3527116/70‑1 AGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGATATTACTATACCTTTGA > 1:577873/1‑71 ATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAA > 1:1235017/1‑50 ATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAA > 1:3145202/1‑50 TTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGATATTACTATACCTTTGATAA < 1:1045295/71‑1 TTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGATATTACTATACCTTTGA > 1:3053389/1‑67 TTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAA > 1:983350/1‑48 AGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAGATATTACTATACCTTTGATAAT > 1:1012338/1‑65 AAAGATATTACTATACCTTTGATAATTCATTACTATTTACTGAGAGCATTCAGAACACTACACAAATCTTT > 1:2533512/1‑71 AAAGATATTACTATACCTTTGATAATTCATTACTATT < 1:4203459/37‑1 AAGATATTACTATACCTTTGATAATTCATTACTATTTACTGAGAGCATTCAGAACACTACACAAATCTTTC > 1:4472950/1‑71 AAGATATTACTATACCTTTGATAATTCATTACTATTTACTGAGAGCATTCAGAACACTACACAAATCTTT > 1:2381428/1‑70 AAGATATTACTATACCTTTGATAATTCATTACTATTTACTGAGAGCATTCAGAACACTACACAAATCTTT > 1:4979786/1‑70 AAGATATTACTATACCTTTGATAATTCATTACTAT > 1:3898435/1‑35 AGATATTACTATACCTTTGATAATTCATTACTATTTACTGAGAGCATTCAGAACACTACACAAATCTTTC > 1:2284741/1‑70 GATATTACTATACCTTTGATAATTCATTACTATTTACTGAGAGCATTCAGAACACTACACAAATCTTTCCA > 1:2002738/1‑71 CGTTATGATTTAGCGTGGAAAGATTTGTGTAGTGTTCTGAATGCTCTCAGTAAATAGTAATGAATTATCAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/578398‑578470‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagATATTACTATACCTTTGATAATTCATTACTATTTACTGAGAGCATTCAGAACACTACACAAATCTTTCCA < AP009048/578482‑578413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |