New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 381056 =NA (NA)4 (0.080) 4/90 NT NA coding (159/906 nt) insD IS2 insertion element transposase InsAB'
?AP009048 381083 = NA (NA)coding (186/906 nt) insD IS2 insertion element transposase InsAB'

Only 100 of 142 total aligned reads displayed.

CTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/381131‑381056
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggagaGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCT  >  AP009048/381083‑381152
                                                                                                                                                  
CTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATAC                                                                             >  1:3301267/1‑71
CTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATAC                                                                             >  1:7607/1‑71
CTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATAC                                                                             >  1:4508675/1‑71
CTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATAC                                                                             >  1:1470208/1‑71
 TGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACG                                                                            >  1:1166136/1‑71
 TGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACG                                                                            >  1:4420179/1‑71
 TGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACG                                                                            >  1:544291/1‑71
  GTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACG                                                                            >  1:3560794/1‑70
  GTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACG                                                                            >  1:2622251/1‑70
  GTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACG                                                                            >  1:1727/1‑70
   TCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGG                                                                           <  1:2533605/70‑1
   TCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACG                                                                            >  1:2733047/1‑69
   TCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACG                                                                            >  1:2009259/1‑69
   TCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACG                                                                            >  1:4398601/1‑69
   TCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACG                                                                            <  1:4048277/69‑1
   TCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGAAGCTCTCCGATAACATGGTGTATACG                                                                            >  1:264202/1‑69
    CTGCGACGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATAC                                                                             <  1:515039/67‑1
    CTGCGAAGCAGCTCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGG                                                                           <  1:4347004/69‑1
    CTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACG                                                                            >  1:3694582/1‑68
     TGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         >  1:1521566/1‑70
     TGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         >  1:1804332/1‑70
      GCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         >  1:2626756/1‑69
      GCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         >  1:3667533/1‑69
       ctAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         <  1:3057344/66‑1
       CGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGA                                                                        <  1:212256/69‑1
       CGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGA                                                                        <  1:1182171/69‑1
       CGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGA                                                                        <  1:5120336/69‑1
       CGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         <  1:2765407/68‑1
       CGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         <  1:1583701/68‑1
       CGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         <  1:6262/68‑1
        GAAGCAGCGGCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGA                                                                          >  1:3530486/1‑66
        GAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGA                                                                        <  1:3941715/68‑1
        GAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         >  1:2094051/1‑67
        GAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         >  1:3406664/1‑67
        GAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         >  1:2542703/1‑67
        GAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACG                                                                            <  1:4705270/64‑1
         AAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGA                                                                        >  1:3066057/1‑67
         AAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGA                                                                        >  1:3907191/1‑67
          AGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGA                                                                        <  1:4637582/66‑1
          AGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         <  1:755868/65‑1
            CAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGTTGTATAC                                                                             <  1:3924640/59‑1
            CAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATAC                                                                             <  1:4770008/59‑1
             AGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGG                                                                           >  1:1157213/1‑60
             AGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGG                                                                           >  1:4596664/1‑60
              GCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGA                                                                        <  1:2729647/62‑1
              GCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         <  1:1859950/61‑1
                GCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         <  1:3965800/59‑1
                GCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGG                                                                           <  1:3762257/57‑1
                GCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGCATACGG                                                                           <  1:668871/57‑1
                  CCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATAC                                                                             <  1:1426050/53‑1
                  CCATACCCGACGATAACCATACGTTGGCAGCGCTCCGATAACATGGTGTATAC                                                                             <  1:5113441/53‑1
                       CCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATAC                                                                             <  1:2276163/48‑1
                          gcCGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATAC                                                                             >  1:2335332/3‑45
                          GACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATAC                                                                             >  1:968594/1‑45
                           ACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACG                                                                            <  1:78513/45‑1
                                AACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGA                                                                        <  1:57825/44‑1
                                  CCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         <  1:3368025/41‑1
                                    ATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         >  1:173227/1‑39
                                    ATACGTTGGCAGCTCTCCGATAACATGGTGTATACGG                                                                           <  1:275386/37‑1
                                     TACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         <  1:1109998/38‑1
                                      ACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAG                                                                         >  1:3832352/1‑37
                                      ACGTTGGCAGCTATCCGATAACATGGTGTATACGGAG                                                                         >  1:4239348/1‑37
                                                     CGATAACATGGTGTATACGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGA                          <  1:596559/69‑1
                                                                      CGGAGAGCTGCCAACGTATGGTTATCGTCGGGTTTGGGCGCTGCTTCGCAGACAGG                      >  1:3572011/1‑56
                                                                      CGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTA       >  1:365566/1‑71
                                                                      CGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTA       >  1:1546160/1‑71
                                                                      CGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTA       >  1:4972013/1‑71
                                                                      CGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGT        <  1:4115725/70‑1
                                                                      CGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGT        <  1:4251443/70‑1
                                                                      CGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGG         <  1:65078/69‑1
                                                                      CGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTT              <  1:1912208/64‑1
                                                                      CGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCG                              >  1:1025670/1‑48
                                                                      CGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCT                                 >  1:3272308/1‑45
                                                                       GGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTAT      >  1:3401004/1‑71
                                                                       GGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTAT      <  1:4823501/71‑1
                                                                       GGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTAT      <  1:4982679/71‑1
                                                                       GGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTAT      <  1:133617/71‑1
                                                                       GGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTAT      <  1:3802371/71‑1
                                                                       GGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTA       <  1:1570158/70‑1
                                                                       GGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAG                   <  1:4105439/58‑1
                                                                       GGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGC                                  <  1:5076411/43‑1
                                                                        GAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTAT      <  1:3524034/70‑1
                                                                        GAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTAT      >  1:2902477/1‑70
                                                                        GAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCG                              <  1:1975715/46‑1
                                                                        GAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGC                                     >  1:1989841/1‑39
                                                                        GAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGC                                     >  1:1117353/1‑39
                                                                         AGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGC    <  1:1962182/71‑1
                                                                         AGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGC    <  1:2562303/71‑1
                                                                         AGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGC    <  1:1648842/71‑1
                                                                         AGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGC    >  1:262207/1‑71
                                                                         AGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGC    <  1:285276/71‑1
                                                                         AGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGC    >  1:3965365/1‑71
                                                                         AGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGAT           <  1:28839/64‑1
                                                                         AGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACA                        >  1:1630871/1‑51
                                                                         AGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGC                                     >  1:2051179/1‑38
                                                                          GAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCC   <  1:3570714/71‑1
                                                                          GAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAA                 >  1:1325979/1‑57
                                                                          GAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAG                       >  1:1499733/1‑51
                                                                           AGCTGCCAACGTATGGTTATCGTCTGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCT  <  1:2612297/71‑1
                                                                           AGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACT               <  1:4778633/58‑1
                                                                                                                                                  
CTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/381131‑381056
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggagaGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCT  >  AP009048/381083‑381152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.