| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 225680 = | 30 (0.530) | 4 (0.080) | 3/90 | NT | 13.1% | intergenic (+105/‑79) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA |
| ? | AP009048 | = 3468101 | NA (NA) | intergenic (‑61/+133) | rrlB/gltT | 23S ribosomal RNA/tRNA‑Glu | |||||
CCGAAGATGTTTCTTGCGATCCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225751‑225680‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgttcGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGC < AP009048/3468101‑3468033 CCGAAGATGTTTCTTGCGATCCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTT < 1:2902801/71‑1 TTCTTGCGATCCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCAT > 1:3317933/1‑57 CTTGCGATCCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTC > 1:2228659/1‑60 TGCGATCCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCAT > 1:3266924/1‑53 TCATCGTGTTGCGAAAATTTGAGAGACCCACGAACAACTTTCATTG < 1:557483/46‑1 ATCTTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTT < 1:4386338/46‑1 TTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTT > 1:87674/1‑40 AAATTTGAGAGACTCACGAACAACTTTCATTGTTC > 1:2850098/1‑35 ACGAACAACTTTCATTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCT > 1:4786760/1‑70 CGAACAACTCTCGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTC < 1:5092836/71‑1 GAACAACTTTCGTTGTTCGTGAGTCTCTCAAATTTTC > 1:1127313/1‑37 CAACTTTCATTGTTCGTGAGTCTCTCAAATTTTCGCAA > 1:1320458/1‑38 TTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTT < 1:5158507/71‑1 TTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTT < 1:4474791/71‑1 TTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGT > 1:1416300/1‑70 TTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAA > 1:1477138/1‑51 TGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGT > 1:4919987/1‑69 TGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGT > 1:1673522/1‑61 TGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATG > 1:1734304/1‑38 TGTTCGTGAGTCTCTCAAATTTTCGCAACACGATG < 1:3943013/35‑1 GTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTA < 1:2182039/70‑1 GTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTT > 1:3470468/1‑69 GTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTT > 1:1711324/1‑69 GTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTT > 1:3162839/1‑69 GTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTT > 1:4925123/1‑61 GTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAA > 1:2421689/1‑49 GTTCGTGAGTCTCTCAAATTTTCGCAACACGATGAT > 1:5132646/1‑36 TTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAG > 1:4928017/1‑71 TTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCT < 1:1829633/53‑1 TCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAG < 1:2990100/70‑1 TCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT < 1:4881634/61‑1 TCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTT > 1:107384/1‑53 TCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAAC < 1:2115214/48‑1 TCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAA > 1:2009803/1‑42 CGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGC > 1:4718021/1‑70 CGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGC > 1:479845/1‑70 CGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGC < 1:682212/70‑1 CGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCG < 1:1642588/39‑1 CCGAAGATGTTTCTTGCGATCCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225751‑225680‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgttcGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGC < AP009048/3468101‑3468033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |