| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 225047 = | NA (NA) | 3 (0.060) | 3/92 | NT | NA | noncoding (1277/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 225075 = | NA (NA) | noncoding (1305/1542 nt) | rrsH | 16S ribosomal RNA | |||||
ATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225121‑225047‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGA > AP009048/225075‑225144 ATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGG > 1:2122888/1‑71ATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGG > 1:4485631/1‑71ATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGG < 1:4653874/71‑1ATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGG > 1:3816641/1‑71ATTACTAGCGATTCCAACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGG > 1:1238902/1‑71 TTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGT < 1:5103758/71‑1 TTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGT > 1:2633973/1‑71 TTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGT < 1:3458996/71‑1 TTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGT > 1:763371/1‑71 TACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTC > 1:4411743/1‑71 TACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTC > 1:96892/1‑71 ACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCC > 1:3987496/1‑71 ACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTC > 1:4054265/1‑70 CTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCG < 1:1154850/71‑1 CTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCG > 1:2381879/1‑71 CTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCG < 1:2225302/71‑1 CTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCG < 1:2828957/71‑1 CTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCG < 1:5085338/71‑1 CTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCC < 1:433998/70‑1 CTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCC < 1:4146397/70‑1 CTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCC < 1:21685/70‑1 CTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCC < 1:576485/70‑1 GCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCG > 1:4814104/1‑68 GCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTC > 1:2478994/1‑66 GATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCG > 1:5024176/1‑66 GATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTC > 1:4876222/1‑64 TTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCC < 1:3909453/63‑1 CGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCC < 1:3711493/60‑1 CGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCC < 1:280085/60‑1 CGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCC < 1:273937/60‑1 CTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGT > 1:2592813/1‑55 CATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGG > 1:2733798/1‑51 GGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGG < 1:2944868/48‑1 AGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTC > 1:333044/1‑48 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGATGTCCG < 1:2737740/48‑1 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCG > 1:3701589/1‑48 GAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCC > 1:3655526/1‑45 GAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGG < 1:2827088/42‑1 GTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTC > 1:739260/1‑42 GTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGT > 1:3333557/1‑41 TTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGTTCCG < 1:1431608/43‑1 TTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCG < 1:3373676/43‑1 AGACTCCAATCCGGACTACGACGCACTTTATGAGGTC > 1:4953102/1‑37 GACTCCAATCCGGACTACGACGCACTTTATGAGGTC > 1:998383/1‑36 ACTCCAATCCGGACTACGACGCACTTTATGAGGTCCG > 1:1884312/1‑37 CAATCCGGACTACGACGCACTTTATGAGGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATC > 1:752987/1‑71 CGGACTACGACGCACTTTATGAGGTCCGGATTGGAGTCTGCAACTCGACT > 1:1352165/1‑50 CGACGCACTTTATGAGGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCG < 1:4673781/70‑1 GTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGC > 1:2498985/1‑45 GTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAAT > 1:3544468/1‑42 TCCGGATTGGAGTCTGCAACTCGACTCCATGTAGTCGGAATCGCTAGTAA < 1:4266185/50‑1 TCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGA < 1:1315129/62‑1 TCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCA < 1:526000/60‑1 TCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATC < 1:3734594/59‑1 TCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGAT < 1:3208282/58‑1 TCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGAT < 1:177992/58‑1 TCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAA < 1:2249736/50‑1 TCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAA < 1:3688677/50‑1 CCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGT > 1:370900/1‑71 CCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGT > 1:2215397/1‑71 CCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGT > 1:1705389/1‑71 CCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGG > 1:2498518/1‑70 CCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGA < 1:2169796/61‑1 CCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGG < 1:4856116/37‑1 CCGGATTGGAGTCTGCAACTCGACTACATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGT > 1:4198048/1‑71 CGGATTGGAGTCTTCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG < 1:1742939/71‑1 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG < 1:1789943/71‑1 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG < 1:3169146/71‑1 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG < 1:5183340/71‑1 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG < 1:1213890/71‑1 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG < 1:4029194/71‑1 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG < 1:2416002/71‑1 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG < 1:2662115/71‑1 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG < 1:3462681/71‑1 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGT > 1:4266318/1‑70 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGT < 1:1032164/70‑1 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGT > 1:883083/1‑70 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGT > 1:3451360/1‑70 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGT > 1:378305/1‑70 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGT > 1:4546237/1‑70 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGT > 1:4567889/1‑70 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAG < 1:2438896/59‑1 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAG < 1:3078785/59‑1 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAG > 1:3440066/1‑59 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGAT < 1:856/56‑1 CGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAA > 1:2087916/1‑48 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGA < 1:2297696/71‑1 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGA < 1:1295223/71‑1 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGA < 1:2432369/71‑1 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGA < 1:3787180/71‑1 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG > 1:2080098/1‑70 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG > 1:3545865/1‑70 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTG > 1:3416664/1‑70 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGT > 1:3743817/1‑69 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGT < 1:4875395/69‑1 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATC < 1:1618789/56‑1 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGT < 1:2488314/45‑1 ATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225121‑225047‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGA > AP009048/225075‑225144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |