| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,695,520 | G→A | 6.9% | Q164* (CAG→TAG) | yfhQ ← | predicted methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,695,520 | 0 | G | A | 6.9% | 332.2 / 10.5 | 101 | Q164* (CAG→TAG) | yfhQ | predicted methyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (50/44); new base A (2/5); total (52/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01 | |||||||||||
Only 100 of 105 total aligned reads displayed.
AAAACGCTCCAGATCATCGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGTTCAGCGAGCTG > Exported/1695452‑1695590 | aaaaCGCTCCAGATCATCGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAg > 1:2326994/1‑71 (MQ=255) aaaCGCTCCAGATCATCGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTg < 1:3874647/68‑1 (MQ=255) aCGCTCCAGATCATCGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAg > 1:4068640/1‑68 (MQ=255) cGCTCCAGATCATCGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTg < 1:3721363/65‑1 (MQ=255) cGCTCCAGATCATCGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTg < 1:624788/65‑1 (MQ=255) cGCTCCAGATCATCGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTgc < 1:2511063/71‑1 (MQ=255) ccAGATCATCGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTgccagc > 1:4059356/1‑71 (MQ=255) ccAGATCATCGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTgccagc > 1:346387/1‑71 (MQ=255) cAGATCATCGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTgccagc < 1:2189191/70‑1 (MQ=255) tcatcGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGc < 1:3537771/71‑1 (MQ=255) tcatcGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGc < 1:587655/71‑1 (MQ=255) tcatcGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGc < 1:1127570/71‑1 (MQ=255) catcGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGt > 1:2191316/1‑58 (MQ=255) catcGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGc > 1:1580990/1‑70 (MQ=255) catcGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGc > 1:4661418/1‑70 (MQ=255) catcGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGc > 1:3714083/1‑70 (MQ=255) tcGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTgccag < 1:3701871/62‑1 (MQ=255) tcGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCAt < 1:3138048/71‑1 (MQ=255) tcGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCAt < 1:3765025/71‑1 (MQ=255) cGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCAt > 1:2656002/1‑70 (MQ=255) cGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATg > 1:3440137/1‑71 (MQ=255) gACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATg < 1:4354728/70‑1 (MQ=255) ccAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATgcgc < 1:4296133/71‑1 (MQ=255) cAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCa > 1:573560/1‑71 (MQ=255) aGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCAAGCCAGGc < 1:3670546/62‑1 (MQ=255) gCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACt > 1:3677718/1‑71 (MQ=255) aTACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATgcg < 1:4646458/63‑1 (MQ=255) aTACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATgcg < 1:1051447/63‑1 (MQ=255) aTACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATgcg < 1:2115128/63‑1 (MQ=255) tACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATa < 1:4457308/71‑1 (MQ=255) aCGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTg < 1:2457375/45‑1 (MQ=255) aCGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAg > 1:4389905/1‑71 (MQ=255) aCGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAg > 1:3813143/1‑71 (MQ=255) aCGGCGTCTCTTCATGCTCGACCTGCTCGCAGTTTTCCTGAGTTg < 1:4141224/45‑1 (MQ=255) aCGGCGTCTCTTCATGCTCGACCTGCTCGCAGTTTTCCTGAGTTg < 1:4136021/45‑1 (MQ=255) cGGCGTCTCTTCATGCTCGACCTGGTCGCCGTTTTCCTGAGTTGGCAGCCAGGCCATGCGCACTTCATa < 1:4087188/69‑1 (MQ=255) tctcTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATa < 1:716899/71‑1 (MQ=255) tctcTTCATGCTCGACCTGCTCGCCGTTTTCCTAAGTTgc < 1:3790887/40‑1 (MQ=255) tctcTTCATGCTCGACCTGCTCGCCGTTTTCCTAAGTTgc < 1:2287245/40‑1 (MQ=255) tctcTTCATGCTCGACCTGCTCGCCGTTTTCCTAAGTTgc < 1:1559097/40‑1 (MQ=255) tctcTTCATGCTCGACCTGCTCGCCGTTTTCCTAAGTTgc < 1:1774871/40‑1 (MQ=255) tctcTTCATGCTCGACCTGCTCGCCGTTTTCCTAAGTTgc < 1:3094150/40‑1 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTgccagcca > 1:2603434/1‑44 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTgccagcca > 1:827360/1‑44 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTc < 1:1654062/59‑1 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTc < 1:3395643/59‑1 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATa > 1:4596950/1‑62 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATagc > 1:2006029/1‑69 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATagc > 1:3904413/1‑69 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAAc > 1:1109972/1‑71 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAAc > 1:4716257/1‑71 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAAc > 1:1300188/1‑71 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAAc > 1:867416/1‑71 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAAc > 1:3009424/1‑71 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAAc > 1:2964486/1‑71 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAAc > 1:1562985/1‑71 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTAAGTTgcca > 1:1871472/1‑40 (MQ=255) tctTCATGCTCGACCTGCTCGCCGTTTTCCTAAGTTgcca > 1:3510185/1‑40 (MQ=255) tctTCAAGCTCGACCTGCTCGCCGTTTTCCTGAGTTgccagcca > 1:607077/1‑44 (MQ=255) ttCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCAt > 1:3253591/1‑59 (MQ=255) ttCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCAt > 1:555858/1‑59 (MQ=255) ttCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCt > 1:360204/1‑71 (MQ=255) ttCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCAAGGCCATGCGCACTTCAt > 1:1838297/1‑59 (MQ=255) cATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTg > 1:269321/1‑70 (MQ=255) cATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTg < 1:1411125/70‑1 (MQ=255) cATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTg < 1:3403485/70‑1 (MQ=255) aTGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGaa > 1:4257718/1‑71 (MQ=255) aTGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGa < 1:3611093/70‑1 (MQ=255) aTGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGa < 1:3467559/70‑1 (MQ=255) aTGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGa < 1:3973685/70‑1 (MQ=255) aTGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGa < 1:1218191/70‑1 (MQ=255) aTGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGa < 1:2100954/70‑1 (MQ=255) aTGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGa < 1:2907598/70‑1 (MQ=255) aTGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGa < 1:2252532/70‑1 (MQ=255) aTGCTAGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCAc > 1:4482031/1‑51 (MQ=255) tGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAAc > 1:588108/1‑71 (MQ=255) gCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAAcc > 1:1898097/1‑71 (MQ=255) gCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAAc > 1:2519824/1‑70 (MQ=255) cTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCg > 1:88772/1‑71 (MQ=255) tCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGc > 1:2702732/1‑71 (MQ=255) cTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATaa > 1:1072811/1‑53 (MQ=255) cTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATaa > 1:1758135/1‑53 (MQ=255) cGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCaga > 1:3542728/1‑41 (MQ=255) cGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATa > 1:2702568/1‑43 (MQ=255) cGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATa > 1:66711/1‑43 (MQ=255) cGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATa > 1:4321555/1‑43 (MQ=255) cGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGTCAATAACCTGAACCGCCATCGCCAGGTTc < 1:2642489/71‑1 (MQ=255) cGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGTTc < 1:549510/71‑1 (MQ=255) cGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGTTc < 1:301707/71‑1 (MQ=255) ttttCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGc > 1:2693526/1‑62 (MQ=255) ttttCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGt < 1:3381794/67‑1 (MQ=255) ttttCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGt < 1:754504/67‑1 (MQ=255) ttttCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGt < 1:853213/67‑1 (MQ=255) tttCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGtt < 1:2071556/67‑1 (MQ=255) ttCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGTTCAGc > 1:2842812/1‑70 (MQ=255) ttCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGTTCAGc > 1:1401293/1‑70 (MQ=255) tCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGTTCAGCg < 1:1696790/70‑1 (MQ=255) tCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGTTCAGCg < 1:4228307/70‑1 (MQ=255) cTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGTTCAGCGAGc < 1:353486/71‑1 (MQ=255) cTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGTTCAGCGAGc < 1:4142744/71‑1 (MQ=255) | AAAACGCTCCAGATCATCGACCAGCGGATACGGCGTCTCTTCATGCTCGACCTGCTCGCCGTTTTCCTGAGTTGCCAGCCAGGCCATGCGCACTTCATAGGCAATAACCTGAACCGCCATCGCCAGGTTCAGCGAGCTG > Exported/1695452‑1695590 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |