| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,091,167 | T→C | 8.4% | E178E (GAA→GAG) | sufB ← | component of SufBCD complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,091,167 | 0 | T | C | 8.4% | 199.5 / 8.9 | 71 | E178E (GAA→GAG) | sufB | component of SufBCD complex |
| Reads supporting (aligned to +/- strand): ref base T (24/41); new base C (3/3); total (27/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.37e-01 | |||||||||||
CCGCATTAAGCGCGGCAAAGAAGTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCCAGTTTTTCGCGAT > Exported/1091100‑1091237 | ccgcATTAAGCGCGGCAAAGAAGTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTcc < 1:597576/71‑1 (MQ=255)ccgcATTAAGCGCGGCAAAGAAGTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTcc < 1:3368319/71‑1 (MQ=255) cATTAAGCGCGGCAAAGAAGTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTcc < 1:265448/68‑1 (MQ=255) aTTAAGCGCGGCAAAGAAGTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTcc < 1:222361/67‑1 (MQ=255) ttAAGCGCGGCAAAGAAGTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGCTCCGGGTg < 1:3340312/71‑1 (MQ=255) aGCGCGGCAAAGAAGTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGAt < 1:799874/70‑1 (MQ=255) aGCGCGGCAAAGAAGTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGAt < 1:2267286/70‑1 (MQ=255) gcgcGGCAAAGAAGTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCg < 1:3425612/71‑1 (MQ=255) cgcgGCAAAGAAGTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGt < 1:4218521/71‑1 (MQ=255) aaaGAAGTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCg > 1:2084387/1‑71 (MQ=255) aagaagTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTcc < 1:1764664/54‑1 (MQ=255) agaagTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGa > 1:2293328/1‑59 (MQ=255) agaagTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGAt > 1:1122207/1‑60 (MQ=255) agTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCa < 1:3105040/71‑1 (MQ=255) agTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCa < 1:540256/71‑1 (MQ=255) ttGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATc < 1:1712841/63‑1 (MQ=255) ttGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATc < 1:3327180/63‑1 (MQ=255) gTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCg > 1:242711/1‑55 (MQ=255) gTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCg > 1:2432777/1‑55 (MQ=255) aTTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAgg < 1:680632/71‑1 (MQ=255) aTTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAg < 1:2949760/70‑1 (MQ=255) aTTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAg > 1:2838370/1‑70 (MQ=255) tCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTgg < 1:1832820/53‑1 (MQ=255) tCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTgg < 1:2858472/53‑1 (MQ=255) ggCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAg > 1:4270373/1‑69 (MQ=255) ggCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGa > 1:3832116/1‑70 (MQ=255) ggCACCACGGTGCCGAGATATTTACGCACCAGCTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGa > 1:4746705/1‑70 (MQ=255) ggCACCACGGTGCCGAGATATTTACGCACCAGCTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGa > 1:309768/1‑70 (MQ=255) ggCACCACGGTGCCGAGATATTTACGCACCAGCTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGa > 1:1133739/1‑70 (MQ=255) caccacGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGaaaa < 1:3899393/71‑1 (MQ=255) accacGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGaaaa > 1:1800203/1‑70 (MQ=255) accacGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAaat < 1:507586/71‑1 (MQ=255) accacGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAaat < 1:3562289/71‑1 (MQ=255) accacGGTGACGATATATTTACGCACCAGTTCCGGGTTAt < 1:2058878/40‑1 (MQ=25) cacGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAaataa > 1:2812267/1‑71 (MQ=255) cacGGTGCCGAGATATTTACGCACCAGCTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAaataa < 1:4216535/71‑1 (MQ=255) acGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGaaa > 1:2258823/1‑66 (MQ=255) acGGTGCCGAGATATTTACGCACCAGCTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAaataat < 1:683617/71‑1 (MQ=255) cGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACa > 1:2100885/1‑61 (MQ=255) cGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAaataat > 1:133924/1‑70 (MQ=255) cGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGc < 1:2256171/71‑1 (MQ=255) gagaTATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCt < 1:3535621/71‑1 (MQ=255) gagaTATTTACGCACCAGTTCCGGGTGATCGGGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCt < 1:2131610/71‑1 (MQ=255) agaTATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAaat < 1:4214459/59‑1 (MQ=255) agaTATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAaat < 1:1649766/59‑1 (MQ=255) agaTATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAaat < 1:3755994/59‑1 (MQ=255) agaTATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAaat < 1:473039/59‑1 (MQ=255) atatTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTcc > 1:474965/1‑70 (MQ=255) atTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGc > 1:4752184/1‑70 (MQ=255) atTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGc > 1:677471/1‑70 (MQ=255) tACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTg > 1:3205025/1‑61 (MQ=255) tACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTg > 1:2342086/1‑61 (MQ=255) tACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCCAg < 1:3644013/70‑1 (MQ=255) tACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCCAg < 1:3675767/70‑1 (MQ=255) tACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCCAGt > 1:4145124/1‑71 (MQ=255) tACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCCAGt > 1:272152/1‑71 (MQ=255) tACGCACCAGTT‑‑GGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTg > 1:2374930/1‑59 (MQ=255) gCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAGCAGAAAATAATTCCATGc < 1:2416109/59‑1 (MQ=255) gCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGc < 1:1971759/59‑1 (MQ=255) cACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGaaaa < 1:4636224/47‑1 (MQ=255) cACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGaaaa < 1:4020177/47‑1 (MQ=255) cACCAGTTCCGGGTGATCGTGAATCGCCTCACCAAAGGAACAGaaaa < 1:3953104/47‑1 (MQ=255) aCCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAAtt < 1:2715858/51‑1 (MQ=255) aCCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAAtt < 1:390298/51‑1 (MQ=255) aCCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAAtt < 1:2274847/51‑1 (MQ=255) cAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCCAGTTTTTcgc < 1:1456337/71‑1 (MQ=255) cAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCCAGTTTTTcgc > 1:2807026/1‑71 (MQ=255) cAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCCAGTTTTTcgc < 1:881238/71‑1 (MQ=255) aGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCCAGTTTTTcgcg < 1:2901376/71‑1 (MQ=255) gTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCGAGTTTTTCGCGa > 1:3634092/1‑71 (MQ=255) gTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCCAGTTTTTCGCGa > 1:2313721/1‑71 (MQ=255) ttCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGaaaa > 1:4030721/1‑41 (MQ=255) ttCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGaaaa > 1:3070067/1‑41 (MQ=255) ttCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGaaaa > 1:55424/1‑41 (MQ=255) ttCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGaaaa > 1:1318966/1‑41 (MQ=255) ttCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAaataa < 1:3482526/44‑1 (MQ=255) ttCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCCAGTTTTTCGCGAt < 1:1354566/71‑1 (MQ=255) ttCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCCAGTTTTTCGCGAt < 1:1276540/71‑1 (MQ=255) | CCGCATTAAGCGCGGCAAAGAAGTTGTCATTCCCCGGCACCACGGTGCCGAGATATTTACGCACCAGTTCCGGGTGATCGTGGATCGCCTCACCAAAGGAACAGAAAATAATTCCCTGCTCCGCCAGTTTTTCGCGAT > Exported/1091100‑1091237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |