| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 898,949 | A→G | 7.1% | N70S (AAC→AGC) | pspB → | transcriptional regulator of psp operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 898,949 | 0 | A | G | 7.1% | 205.4 / 5.5 | 70 | N70S (AAC→AGC) | pspB | transcriptional regulator of psp operon |
| Reads supporting (aligned to +/- strand): ref base A (27/38); new base G (3/2); total (30/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGAAGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAATTATGGCGTATTCCACAGCAGGGCA > Exported/898883‑899016 | atgaAGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACt < 1:4454830/69‑1 (MQ=255)atgaAGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTgg < 1:2187039/71‑1 (MQ=255)atgaAGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTg < 1:2818099/70‑1 (MQ=255)atgaAGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTg < 1:2064135/70‑1 (MQ=255)atgaAGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTg < 1:440347/70‑1 (MQ=255)atgaAGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTg < 1:1940459/70‑1 (MQ=255) aaGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTgg < 1:3140463/68‑1 (MQ=255) aaGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTgg < 1:2401599/68‑1 (MQ=255) aaGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTgg < 1:1655957/68‑1 (MQ=255) aaGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAgg > 1:474326/1‑71 (MQ=255) aGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAGCTGGAggg < 1:3545162/71‑1 (MQ=255) aaaaCGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATACGAACTGGAGGGATc > 1:4394312/1‑71 (MQ=255) aaCGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGc > 1:1444377/1‑71 (MQ=255) aCGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGc > 1:362264/1‑70 (MQ=255) aCGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCt < 1:3895440/71‑1 (MQ=255) aCGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCt < 1:3744327/71‑1 (MQ=255) aCGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCt < 1:923133/71‑1 (MQ=255) cGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTa < 1:1163082/71‑1 (MQ=255) tGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATgg < 1:2760364/71‑1 (MQ=255) tGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATgg < 1:3468531/71‑1 (MQ=255) gcgcGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATgg < 1:2733132/70‑1 (MQ=255) gcgAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTg < 1:3534707/52‑1 (MQ=255) gAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCggg > 1:241169/1‑70 (MQ=255) aaCGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGAt > 1:1780149/1‑56 (MQ=255) aaCGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGAt > 1:1255080/1‑56 (MQ=255) aaCGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGAt > 1:94700/1‑56 (MQ=255) aaCGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAAt > 1:3307911/1‑63 (MQ=255) gTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTa < 1:2005812/71‑1 (MQ=255) gTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTa < 1:3062003/71‑1 (MQ=255) tATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTaa < 1:1666744/71‑1 (MQ=255) ttCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCt < 1:3129112/54‑1 (MQ=255) ttCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCt < 1:3876857/54‑1 (MQ=255) ttCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCt < 1:3973539/54‑1 (MQ=255) ttCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCt < 1:1981137/54‑1 (MQ=255) ttCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCt < 1:1429011/54‑1 (MQ=255) tCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTg < 1:492963/42‑1 (MQ=255) cAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAGCTGGAGGGATCGCTAATGGCGGGCATTAAtct > 1:2148339/1‑70 (MQ=255) cAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGc > 1:3943609/1‑51 (MQ=255) cAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGc > 1:3166172/1‑51 (MQ=255) cAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGc > 1:1096544/1‑51 (MQ=255) cAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGc > 1:1119282/1‑51 (MQ=255) cAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGc > 1:2697332/1‑51 (MQ=255) ggCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCaa > 1:3730194/1‑71 (MQ=255) gcgcTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCaa > 1:3045665/1‑70 (MQ=255) gcgcTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCaa > 1:2626465/1‑70 (MQ=255) gcgcTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCaa > 1:2539613/1‑70 (MQ=255) gcTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATaa < 1:2825291/71‑1 (MQ=255) gcTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATaa < 1:2045300/71‑1 (MQ=255) gcTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATa > 1:309350/1‑70 (MQ=255) cTGGAATCTATTCTTGATGCAGAACATCCGAACTg < 1:2774369/35‑1 (MQ=255) ggAATCTATTCTTGATGCAGAACATCCGAACTGGa > 1:4219870/1‑35 (MQ=255) ggAATCTATTCTTGATGCAGAACATCCGAACTGGa > 1:2642631/1‑35 (MQ=255) ggAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGAt > 1:113228/1‑40 (MQ=255) ggAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATaaaa > 1:2297050/1‑70 (MQ=255) gAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATaaaaaa > 1:470531/1‑71 (MQ=255) gAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATaaaa < 1:1262735/69‑1 (MQ=255) gAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGAGCGCTAATGGCGGGCATTAATCTCAATaaaaa < 1:1069894/70‑1 (MQ=255) aaTCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATaaa > 1:4661884/1‑67 (MQ=255) aTCTATTCTTGATGCAGAACATGCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAAtt < 1:1179878/71‑1 (MQ=255) aTCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAAt > 1:2598312/1‑70 (MQ=255) tATTCTTGATGCAGAACATCCGAGCTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAATTATg > 1:437494/1‑71 (MQ=255) tATTCTTGATGCAGAACATCCGAGCTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAATTATg > 1:57823/1‑71 (MQ=255) ttCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAATTa < 1:1731967/67‑1 (MQ=255) tCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAATTATg < 1:4431714/68‑1 (MQ=255) aTGCAGAACATCCGAGCTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAATTATGGCGTATTc < 1:3426431/71‑1 (MQ=255) aTGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAATTATGGCGTATTc < 1:3666089/71‑1 (MQ=255) aaCATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAAt < 1:3026363/53‑1 (MQ=255) aCATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAATTATGGCGTATTCCAcagca < 1:3704146/71‑1 (MQ=255) tCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAATTATGGCg < 1:3387210/56‑1 (MQ=255) cGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAATTATGGCGTATTCCACAGCAGGGCa > 1:1097227/1‑71 (MQ=255) | ATGAAGCAAAACGGATGCGCGAACGTATTCAGGCGCTGGAATCTATTCTTGATGCAGAACATCCGAACTGGAGGGATCGCTAATGGCGGGCATTAATCTCAATAAAAAATTATGGCGTATTCCACAGCAGGGCA > Exported/898883‑899016 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |