| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 753,855 | T→C | 6.2% | N189S (AAC→AGC) | ycfT ← | predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 753,855 | 0 | T | C | 6.2% | 284.3 / 8.6 | 96 | N189S (AAC→AGC) | ycfT | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (39/51); new base C (4/2); total (43/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01 | |||||||||||
Only 100 of 103 total aligned reads displayed.
ACACAGGTCATTATTGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTG > Exported/753786‑753924 | acacAGGTCATTATTGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGtt < 1:42419/71‑1 (MQ=255)acacAGGTCATTATTGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGtt < 1:1453156/71‑1 (MQ=255) caGGTCATTATTGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGCTCAt < 1:4479404/71‑1 (MQ=255) ggTCATTATTGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGCTCATTc > 1:2944975/1‑71 (MQ=255) tCATTATTGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTccc < 1:4566496/71‑1 (MQ=255) cATTATTGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTccc > 1:3945359/1‑70 (MQ=255) attattGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCcca > 1:117232/1‑71 (MQ=255) attattGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCcca > 1:3212991/1‑71 (MQ=255) ttattGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCccac < 1:467832/71‑1 (MQ=255) ttattGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCccac < 1:4710797/71‑1 (MQ=255) ttattGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCccac < 1:2974479/71‑1 (MQ=255) ttattGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCccac < 1:3019613/71‑1 (MQ=255) ttattGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCccac < 1:2699014/71‑1 (MQ=255) tattGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCccac > 1:4685612/1‑70 (MQ=255) tattGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCccac > 1:1270033/1‑70 (MQ=255) tattGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCccac > 1:4681131/1‑70 (MQ=255) tattGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCccac > 1:4001859/1‑70 (MQ=255) tgttgCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACg > 1:1674900/1‑71 (MQ=255) ttgCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGc < 1:1526634/71‑1 (MQ=255) gcgcCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGt > 1:4037732/1‑71 (MQ=255) gcgcCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGt > 1:820383/1‑71 (MQ=255) gcgcCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGt > 1:4345129/1‑71 (MQ=255) gcgcCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGt > 1:1076666/1‑71 (MQ=255) cgcCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGt < 1:3762964/70‑1 (MQ=255) gcCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTgg > 1:1282408/1‑71 (MQ=255) gcCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTgg > 1:1255686/1‑71 (MQ=255) gcCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTgg > 1:3417695/1‑71 (MQ=255) ccAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTggg < 1:453857/71‑1 (MQ=255) ccAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTggg < 1:2468917/71‑1 (MQ=255) ccAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTggg < 1:2126938/71‑1 (MQ=255) ccAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTggg < 1:434945/71‑1 (MQ=255) cAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTggg < 1:3667320/70‑1 (MQ=255) cAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGa < 1:2589580/71‑1 (MQ=255) cAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGa < 1:3761500/71‑1 (MQ=255) cAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGa < 1:4715908/71‑1 (MQ=255) cAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGa < 1:4561737/71‑1 (MQ=255) cAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGa < 1:3929126/71‑1 (MQ=255) aaaCCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGtt < 1:3208064/48‑1 (MQ=255) ccATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACg < 1:3831948/70‑1 (MQ=255) ccATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGa < 1:747090/71‑1 (MQ=255) ccATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGa < 1:1761942/71‑1 (MQ=255) aTGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGaaa > 1:4380534/1‑71 (MQ=255) aTGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGaaa > 1:3818032/1‑71 (MQ=255) tGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAAt > 1:1928249/1‑71 (MQ=255) cgcCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAAtt < 1:3304933/70‑1 (MQ=255) cgcCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAAtt < 1:4432637/70‑1 (MQ=255) cgcCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAAtt < 1:4434497/70‑1 (MQ=255) cgcCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTa < 1:1217904/71‑1 (MQ=255) cAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCg < 1:1011149/54‑1 (MQ=255) cAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCg < 1:4015359/54‑1 (MQ=255) cAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCg < 1:1213611/54‑1 (MQ=255) cAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCg < 1:3562776/54‑1 (MQ=255) cAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCg < 1:3335244/54‑1 (MQ=255) cAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCg < 1:481789/54‑1 (MQ=255) cAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCg < 1:2026324/54‑1 (MQ=255) tGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCcaca > 1:2094153/1‑71 (MQ=255) ataaGGCAAAATGCGGATCACACTGTTAATTCCCCACCACGCCGTggg > 1:4223541/1‑48 (MQ=255) taaGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTa < 1:2416880/57‑1 (MQ=255) taaGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTa < 1:4244816/57‑1 (MQ=255) taaGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTcag > 1:633782/1‑71 (MQ=255) taaGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTca > 1:2145599/1‑70 (MQ=255) ggCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTcagcag < 1:3659420/71‑1 (MQ=255) ggCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTcagcag < 1:876011/71‑1 (MQ=255) ggCAAATTGCGGATCACACTCTTCATTCCCCACCACGGCg < 1:4045863/40‑1 (MQ=255) aaaTTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGa < 1:2595069/42‑1 (MQ=255) aTTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTacaa < 1:3691277/71‑1 (MQ=255) ttGCGGATCACACTGTTCATTCCCCACCACGGCGTgg > 1:4008144/1‑37 (MQ=255) ttGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAAtt > 1:3577395/1‑47 (MQ=255) ttGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTaa > 1:4023846/1‑49 (MQ=255) ttGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTacaaa > 1:4227119/1‑71 (MQ=255) ttGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTacaaa > 1:2017879/1‑71 (MQ=255) ttGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTacaaa > 1:818759/1‑71 (MQ=255) ttGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTacaaa > 1:1512310/1‑71 (MQ=255) ttGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTacaaa > 1:871089/1‑71 (MQ=255) ttGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTacaaa > 1:3599214/1‑71 (MQ=255) ttGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTacaaa > 1:4543976/1‑71 (MQ=255) ttGCGGATCACACTGTTCATTCCCCACAACGGCGTGGGAACGAAATTaa > 1:778605/1‑49 (MQ=255) gCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGaa > 1:547699/1‑42 (MQ=255) gCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGaa > 1:920285/1‑42 (MQ=255) gCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGaa > 1:2895979/1‑42 (MQ=255) gCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTacaaac < 1:744638/70‑1 (MQ=255) gCGGATCACACTGCTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTacaaac < 1:105096/70‑1 (MQ=255) gCGGATCACACTGCTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTacaaac > 1:405767/1‑70 (MQ=255) cGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAttt < 1:4041600/44‑1 (MQ=255) cGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAAtt < 1:3407579/44‑1 (MQ=255) cGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAAtt < 1:276147/44‑1 (MQ=255) aTCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGc < 1:1886749/71‑1 (MQ=255) tCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCg < 1:2220141/71‑1 (MQ=255) tCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCg < 1:1640875/71‑1 (MQ=255) tCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCg < 1:456617/71‑1 (MQ=255) cacaCTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCg > 1:3482847/1‑70 (MQ=255) acacTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGaa < 1:4752788/71‑1 (MQ=255) acacTGCTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTcagca > 1:3955864/1‑55 (MQ=255) acacTGCTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTcagca > 1:1309462/1‑55 (MQ=255) cacTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGaa > 1:1638417/1‑70 (MQ=255) tGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGaa < 1:1078002/67‑1 (MQ=255) ttCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGt < 1:632706/69‑1 (MQ=255) ttCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGt < 1:208154/69‑1 (MQ=255) ttCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGt < 1:1704415/69‑1 (MQ=255) ttCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTg < 1:258984/70‑1 (MQ=255) | ACACAGGTCATTATTGTTGCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACACTGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTG > Exported/753786‑753924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |