| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,469,966 | T→G | 5.2% | L316L (CTT→CTG) | atpD → | F1 sector of membrane‑bound ATP synthase, beta subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,469,966 | 0 | T | G | 5.2% | 320.5 / 9.7 | 113 | L316L (CTT→CTG) | atpD | F1 sector of membrane‑bound ATP synthase, beta subunit |
| Reads supporting (aligned to +/- strand): ref base T (52/55); new base G (3/3); total (55/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 124 total aligned reads displayed.
CGTACAGGCAGTATACGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGACCCGCTGGACT > Exported/2469897‑2470036 | cGTACAGGCAGTATACGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCtt < 1:4695446/70‑1 (MQ=255)cGTACAGGCAGTATACGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCtt < 1:2507710/70‑1 (MQ=255)cGTACAGGCAGTATACGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTg < 1:900081/71‑1 (MQ=255)cGTACAGGCAGTATACGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTg < 1:1762413/71‑1 (MQ=255)cGTACAGGCAGTATACGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTg < 1:684441/71‑1 (MQ=255)cGTACAGGCAGTATACGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTg < 1:2455939/71‑1 (MQ=255) tACAGGCAGTATACGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTg < 1:3079755/69‑1 (MQ=255) cAGGCAGTATACGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGc < 1:2636249/71‑1 (MQ=255) ggCAGTATACGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGc < 1:2425040/69‑1 (MQ=255) cAGTATACGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCaa > 1:3788843/1‑69 (MQ=255) gTATACGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGt < 1:1179935/71‑1 (MQ=255) taCGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTgg > 1:849751/1‑70 (MQ=255) taCGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTgg < 1:182821/70‑1 (MQ=255) taCGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTgg > 1:2542183/1‑70 (MQ=255) taCGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTgg > 1:1411898/1‑70 (MQ=255) taCGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTgg < 1:3630071/70‑1 (MQ=255) taCGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGt < 1:4399372/71‑1 (MQ=255) aCGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTa > 1:35067/1‑71 (MQ=255) cGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTa < 1:1592144/70‑1 (MQ=255) gCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGAc > 1:3113256/1‑51 (MQ=255) gCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGAc > 1:4192641/1‑51 (MQ=255) gCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGAc > 1:3124239/1‑51 (MQ=255) cGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGAc > 1:2312120/1‑50 (MQ=255) cGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGt > 1:909841/1‑71 (MQ=255) gATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGt > 1:1188678/1‑69 (MQ=255) gATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCa < 1:3408123/71‑1 (MQ=255) aTGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACTCAACCGTGGTACTGAGCCGTCAg < 1:165944/71‑1 (MQ=255) aTGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGt > 1:4318262/1‑68 (MQ=255) aTGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAg < 1:2933339/71‑1 (MQ=255) aTGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAg < 1:132014/71‑1 (MQ=255) aTGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAg < 1:4146390/71‑1 (MQ=255) aTGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAg < 1:3786272/71‑1 (MQ=255) tgacttgactGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAg < 1:3659978/70‑1 (MQ=255) gacttggctGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGt > 1:607228/1‑66 (MQ=255) cttgactGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATcg > 1:4001699/1‑71 (MQ=255) ttgactGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTg > 1:3431600/1‑51 (MQ=255) ttgactGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATcgc > 1:3997982/1‑71 (MQ=255) ctgacCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGtct < 1:3506926/71‑1 (MQ=255) acCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTctct < 1:1611013/70‑1 (MQ=255) acCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTctct < 1:1752367/70‑1 (MQ=255) acCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTctct < 1:2921162/70‑1 (MQ=255) acCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTg > 1:2792014/1‑71 (MQ=255) cGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGt < 1:908250/71‑1 (MQ=255) cGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGt < 1:2862459/71‑1 (MQ=255) tcCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTAt > 1:3825130/1‑69 (MQ=255) tcCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATc > 1:4016342/1‑70 (MQ=255) tcCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATc > 1:4189031/1‑70 (MQ=255) cGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGAt > 1:2130285/1‑52 (MQ=255) cGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGAt > 1:3128941/1‑52 (MQ=255) cGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATcgc > 1:376330/1‑55 (MQ=255) cGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATcgc > 1:4562971/1‑55 (MQ=255) cGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTa < 1:869574/70‑1 (MQ=255) cGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTa < 1:2598282/70‑1 (MQ=255) cGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTa < 1:3438039/70‑1 (MQ=255) ggCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTa < 1:244764/69‑1 (MQ=255) gCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTg < 1:4256067/60‑1 (MQ=255) gCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTg < 1:3428217/60‑1 (MQ=255) gCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTAccc < 1:4720782/71‑1 (MQ=255) gCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTAccc < 1:105299/71‑1 (MQ=255) cAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCg < 1:3161384/71‑1 (MQ=255) cAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCg < 1:4189578/71‑1 (MQ=255) aaCCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCgg > 1:4063829/1‑71 (MQ=255) caccTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCg > 1:735537/1‑71 (MQ=255) caccTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCg > 1:2829053/1‑71 (MQ=255) caccTTCGCCCACCTGGACTCGACCGTCGTTCTGTCGCGTGACATCGCATCGCTGGGTATCTACCCTGcgg > 1:2501833/1‑69 (MQ=255) accTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCg > 1:3440109/1‑38 (MQ=255) accTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGt > 1:1557602/1‑39 (MQ=255) accTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGt > 1:463845/1‑39 (MQ=255) accTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTAt > 1:2342622/1‑59 (MQ=255) accTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCTGGCCGt < 1:1108/71‑1 (MQ=255) ccTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGtt > 1:1017555/1‑71 (MQ=255) ccTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGtt < 1:3585632/71‑1 (MQ=255) ccTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTATGGGTATCTACCCGGCCGtt < 1:1707410/71‑1 (MQ=255) cTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTAc > 1:426069/1‑61 (MQ=255) cTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTg < 1:2410584/71‑1 (MQ=255) cTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATATAc > 1:1254073/1‑61 (MQ=255) ttGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGt > 1:25921/1‑45 (MQ=255) ttGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGt > 1:511006/1‑45 (MQ=255) ttGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGAc > 1:3774609/1‑71 (MQ=255) ttGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGAc > 1:2247333/1‑71 (MQ=255) tGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCt > 1:1432523/1‑56 (MQ=255) tGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGAcc > 1:2835828/1‑71 (MQ=255) tGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGAcc > 1:3236522/1‑71 (MQ=255) gcgcACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGAcc < 1:2577269/70‑1 (MQ=255) cgcACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGAccc < 1:3554573/70‑1 (MQ=255) ccACCTGGACGCGACCGTCGTACTGTCCCGTGACATCGCCTCGCTGGGTATCTACCCCGCGGTCGACCCGc < 1:3967805/70‑1 (MQ=255) ccACCTGGACGCGACCGTCGTACTGTCCCGTGACATCGCCTCGCTGGGTATCTACCCCGCGGTCGACCCGc < 1:759270/70‑1 (MQ=255) cACCTGGACGCGACCGTCGTACTGTCCCGTGACATCGCCTCGCTGGGTATCTACCCCGCGGTCGACCCGc < 1:83372/70‑1 (MQ=255) aCCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTctct < 1:3237960/43‑1 (MQ=255) aCCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGACCCGCTg > 1:3383060/1‑71 (MQ=255) aCCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGACCCGCTg < 1:2977417/71‑1 (MQ=255) aCCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGACCCGCTg > 1:360219/1‑71 (MQ=255) ccTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGACCCGCt > 1:1975031/1‑69 (MQ=255) ttGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGACCCg > 1:253635/1‑65 (MQ=255) ttGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGACCCg > 1:684147/1‑65 (MQ=255) ttGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGACCCg > 1:1802068/1‑65 (MQ=255) tGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTa > 1:1885760/1‑44 (MQ=255) tGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTa > 1:2251103/1‑44 (MQ=255) tGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGACCCGCTGGACt > 1:3280172/1‑71 (MQ=255) tGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGACCCGCTGGACt > 1:1984961/1‑71 (MQ=255) | CGTACAGGCAGTATACGTACCTGCGGATGACTTGACTGACCCGTCTCCGGCAACCACCTTTGCGCACCTTGACGCAACCGTGGTACTGAGCCGTCAGATCGCGTCTCTGGGTATCTACCCGGCCGTTGACCCGCTGGACT > Exported/2469897‑2470036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |