| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 37564 = | 42 (0.570) | 5 (0.070) | 4/92 | NT | 11.3% | coding (501/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding |
| ? | Exported | 37583 = | 40 (0.590) | coding (482/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding | |||||
GAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/37637‑37564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTC > Exported/37583‑37637 GAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTG > 1:1358382/1‑71GAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTG > 1:4761942/1‑71GAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTG > 1:439874/1‑71GAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTG > 1:3468695/1‑71GAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTG > 1:2301074/1‑71GAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTG > 1:2566240/1‑71GAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTG > 1:3358401/1‑71GAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTG > 1:1237092/1‑71 AATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTGGT < 1:3395330/71‑1 AATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTGGT < 1:557927/71‑1 AATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTGGT < 1:3707718/71‑1 AATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTGGT < 1:1891200/71‑1 ATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTGGT > 1:2130959/1‑70 TGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTGGT < 1:4626891/41‑1 ACACCCCGTACATCGTGGTGTAGGCTCTGCTGGTAATAAAACACT < 1:3676172/45‑1 ACACCCCGTACATCGTGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCA > 1:1449069/1‑71 ACACCCCGTACATCGTGGTGTAGGCGCTGCTGGTAATAAAACACT < 1:2064866/45‑1 CACCCCGTACATCGTGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCAT > 1:1913357/1‑71 ACCCCGTACATCGTGGTGTAGGCGCTGCTGGTAATAAAACACTTA > 1:793246/1‑45 TGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTC < 1:3912411/57‑1 GAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCAGCAGCGCCTACACCCCGTACATCGTGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/37637‑37564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTC > Exported/37583‑37637 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |