| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AP009048 | 3,764,662 | T→C | 17.5% | N106D (AAT→GAT) | yidX ← | predicted lipoproteinC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AP009048 | 3,764,662 | 0 | T | C | 17.5% | 90.2 / 14.3 | 40 | N106D (AAT→GAT) | yidX | predicted lipoproteinC |
| Reads supporting (aligned to +/- strand): ref base T (17/16); new base C (5/2); total (22/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01 | |||||||||||
CTTTTCTTCTTCGTTATTCCAGTAGTAGTAAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGCTGGATCATTGAGCATCT > AP009048/3764594‑3764730 | cTTTTCTTCTTCGTTATTCCAGTAGTAGTAAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTa < 1:4565128/71‑1 (MQ=255)cTTTTCTTCTTCGTTATTCCAGTAGTAGTAAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTa < 1:3155580/71‑1 (MQ=255) ttttCTTCTTCGTTATTCCAGTAGTAGTAAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTa > 1:4435404/1‑70 (MQ=255) tttCTTCTTCGTTATTCCAGTAGTAGTAAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTaa > 1:968321/1‑70 (MQ=255) ttcttcttcGTTATTCCAGTAGTAGTAAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTaaaa > 1:4572567/1‑71 (MQ=255) ttcttcttcGTTATTCCAGTAGTAGTAAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTaa < 1:1384777/69‑1 (MQ=255) ttcttcGTTATTCCAGTAGTAGTAAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTaa < 1:4095727/66‑1 (MQ=255) aTTCCAGTAGTAGTAAAGCGATATTGTGCCGTTAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGt > 1:3737383/1‑71 (MQ=255) aTTCCAGTAGTAGTAAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGt > 1:2430804/1‑71 (MQ=255) cAGTAGTAGTAAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCa < 1:2565768/69‑1 (MQ=255) cAGTAGTAGTAAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCAt < 1:1627600/70‑1 (MQ=255) gtagtaAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCATCg > 1:1704934/1‑67 (MQ=255) gtagtaAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCATCGGCaa > 1:376341/1‑71 (MQ=255) gtagtaAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCATCGGCa < 1:880440/70‑1 (MQ=255) tagtaAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATCTAAAACAAATCTTGCGTCATCGGCAAc < 1:3490427/71‑1 (MQ=255) tatTGTGCCGGTAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCAt > 1:466025/1‑53 (MQ=255) tatTGTGCCGGTAAATTTCTTTTTCCCCGCATCTAAAACAAATCTTg > 1:861725/1‑47 (MQ=255) ttGTGCCGGTAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATtg < 1:3625399/68‑1 (MQ=255) gtgCCGGTAAATTTCTTTTTCCCCGCATCTAAAACAAATCTTGc > 1:289620/1‑44 (MQ=255) ccGGTAAATTTCTTTTTCCCCGCATCTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGtt < 1:2097479/71‑1 (MQ=255) cGGTAAATTTCTTTTTCCCCGCATCTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGtt > 1:2593697/1‑70 (MQ=255) gTAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATtg < 1:2162468/60‑1 (MQ=255) gTAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAg > 1:757849/1‑71 (MQ=255) tAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGc < 1:4455326/62‑1 (MQ=255) aTTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCa < 1:679519/38‑1 (MQ=255) tttCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGc < 1:2934521/69‑1 (MQ=255) tttCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGCTg > 1:4339932/1‑71 (MQ=255) tttCTTTTTCCCCGCATCTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGCTg > 1:1227391/1‑71 (MQ=255) cTTTTTCCCCGCATTTAAAACAAATCTTGCGTCAt > 1:687203/1‑35 (MQ=255) tttCCCCGCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGCTGGATCAt > 1:389966/1‑71 (MQ=255) ttCCCCGCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGCTGGATCAtt > 1:3845455/1‑71 (MQ=255) ttCCCCGCATCTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGCTGGATCAtt > 1:874395/1‑71 (MQ=255) ccccGCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGCTGGATCAtt > 1:3364468/1‑69 (MQ=255) ccccGCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGCTGGATCATTg < 1:2803473/70‑1 (MQ=255) ccccGCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGCTGGATCATTg < 1:307255/70‑1 (MQ=255) gCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGtt < 1:1353640/50‑1 (MQ=255) gCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTaa < 1:856213/52‑1 (MQ=255) gCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGCTGGATCATTGAGCAt > 1:453883/1‑71 (MQ=255) aTTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGCTGGATCATTGAGCATCt > 1:4406434/1‑71 (MQ=255) aTTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGCTGGATCATTGAGCATCt > 1:3460480/1‑71 (MQ=255) tttAAAACAAATCTTGCGTCATCGGCAACCTGAata < 1:4006709/36‑1 (MQ=255) | CTTTTCTTCTTCGTTATTCCAGTAGTAGTAAAGCGATATTGTGCCGGTAAATTTCTTTTTCCCCGCATTTAAAACAAATCTTGCGTCATCGGCAACCTGAATATTGTGCCGGTTAAGTGCTGGATCATTGAGCATCT > AP009048/3764594‑3764730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |