| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AP009048 | 3,685,038 | C→T | 100% | pseudogene (21/582 nt) pseudogene (1084/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AP009048 | 3,685,038 | 0 | C | T | 100.0% | 315.7 / NA | 103 | pseudogene (21/582 nt) pseudogene (1084/1645 nt) | ilvG ilvG | ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (57/46); total (57/46) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 103 total aligned reads displayed.
TGCTGCGCAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCCGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGAATG > AP009048/3684970‑3685103 | tgctgcGCAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGa > 1:2998658/1‑71 (MQ=255) tgcGCAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAg > 1:2547370/1‑71 (MQ=255) cgcAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAg < 1:4160898/69‑1 (MQ=255) cgcAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAg < 1:3535742/69‑1 (MQ=255) gcAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttg < 1:1635628/71‑1 (MQ=255) gcAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttg > 1:1154118/1‑71 (MQ=255) gcAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttg > 1:2588359/1‑71 (MQ=255) cccACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGttt > 1:2617332/1‑70 (MQ=255) ccACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTa < 1:1396871/71‑1 (MQ=255) ccACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTa < 1:1179907/71‑1 (MQ=255) cacaTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa < 1:3664558/71‑1 (MQ=255) cacaTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:3579076/1‑71 (MQ=255) acaTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:352703/1‑70 (MQ=255) acaTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:923870/1‑70 (MQ=255) caTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACa > 1:1804113/1‑59 (MQ=255) caTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttgt < 1:1178439/64‑1 (MQ=255) caTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaaca < 1:2597014/71‑1 (MQ=255) caTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaaca < 1:2602534/71‑1 (MQ=255) caTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaac > 1:2190622/1‑70 (MQ=255) tCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaa > 1:4115306/1‑70 (MQ=255) tCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaa > 1:3505402/1‑70 (MQ=255) cTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaac > 1:1612629/1‑70 (MQ=255) tGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaacaa > 1:4279338/1‑71 (MQ=255) gTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaacaa < 1:770569/69‑1 (MQ=255) gTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaaca < 1:1961096/68‑1 (MQ=255) gTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACg < 1:1655960/71‑1 (MQ=255) tgctgcCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttgtt < 1:175977/58‑1 (MQ=255) tgctgcCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaaca < 1:3522682/67‑1 (MQ=255) tgctgcCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACg < 1:2106839/70‑1 (MQ=255) ctgcCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGAc > 1:1491647/1‑49 (MQ=255) ctgcCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaa > 1:1415774/1‑63 (MQ=255) tgcCCCACATCTGTTGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaac < 1:1805879/63‑1 (MQ=255) tgcCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGgcgc > 1:2500541/1‑71 (MQ=255) ccccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa < 1:3684604/57‑1 (MQ=255) ccccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGcgcg > 1:204249/1‑70 (MQ=255) ccccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGcgcg < 1:2894636/70‑1 (MQ=255) ccccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGcgcg < 1:863240/70‑1 (MQ=255) ccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGcgcg > 1:2758174/1‑68 (MQ=255) ccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGcgcg > 1:3695252/1‑68 (MQ=255) cacaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTa < 1:1803765/53‑1 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTa < 1:2304325/52‑1 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCTCGTAGa > 1:1400633/1‑70 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGa > 1:4411152/1‑70 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGa > 1:2646589/1‑70 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGa > 1:410339/1‑70 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGATTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGa > 1:120901/1‑70 (MQ=255) aTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGgcg > 1:593844/1‑62 (MQ=255) tCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGc > 1:1718642/1‑71 (MQ=255) cTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:1551325/1‑49 (MQ=255) tgtgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGt > 1:4382518/1‑71 (MQ=255) gtgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGt < 1:1983157/61‑1 (MQ=255) tgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAg < 1:3442963/62‑1 (MQ=255) tgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGc < 1:3597132/67‑1 (MQ=255) tgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGt < 1:3201652/69‑1 (MQ=255) ggTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCAc > 1:1633293/1‑71 (MQ=255) gTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCAcc > 1:43353/1‑71 (MQ=255) tCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGt < 1:1659611/57‑1 (MQ=255) cACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCgg > 1:3815356/1‑71 (MQ=255) cACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCgg > 1:2380935/1‑71 (MQ=255) cACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCgg > 1:1180766/1‑71 (MQ=255) acgacgCAATCCGCAGGTTTAGGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCgg < 1:136932/70‑1 (MQ=255) acgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:947276/1‑41 (MQ=255) acgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAg < 1:4260160/61‑1 (MQ=255) acgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAg < 1:4045543/61‑1 (MQ=255) acgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCgg < 1:1964733/70‑1 (MQ=255) acgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCgg < 1:3406887/70‑1 (MQ=255) acgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCg > 1:3896996/1‑69 (MQ=255) acgaccCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCgt < 1:2867039/70‑2 (MQ=255) cgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGa < 1:3883797/71‑1 (MQ=255) gacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaacaac > 1:3240704/1‑46 (MQ=255) gacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCTGGAt < 1:4321506/71‑1 (MQ=255) gacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGAt > 1:67465/1‑71 (MQ=255) gacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGAt > 1:1968924/1‑71 (MQ=255) acgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaacaac < 1:4489085/45‑1 (MQ=255) acgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATg > 1:3366092/1‑71 (MQ=255) cgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATgg < 1:2918528/71‑1 (MQ=255) gCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATa > 1:776731/1‑55 (MQ=255) cAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTc > 1:2863125/1‑71 (MQ=255) aTCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTc < 1:4027958/57‑1 (MQ=255) aTCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCg > 1:2893585/1‑70 (MQ=255) aTCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGt < 1:1475097/71‑1 (MQ=255) aTCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGt < 1:3864165/71‑1 (MQ=255) aTCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGt < 1:4492450/71‑1 (MQ=255) aTCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGt < 1:3007071/71‑1 (MQ=255) tCCGCATGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGt > 1:592551/1‑70 (MQ=255) tCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGt > 1:3922004/1‑70 (MQ=255) tCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTa < 1:752322/71‑1 (MQ=255) ccGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTc > 1:1783241/1‑55 (MQ=255) aGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGc > 1:81289/1‑70 (MQ=255) tttACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAgg < 1:4605734/71‑1 (MQ=255) ttACGATCTGACAGTTGTTTTAACAACAACGTCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAgg > 1:4379344/1‑70 (MQ=255) ttACGATCTGACAGTTGTATTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAgc > 1:3887415/1‑69 (MQ=255) tACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAggca > 1:1345004/1‑69 (MQ=255) tACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAggca > 1:4029675/1‑69 (MQ=255) cGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCTTAACGCCAGGCATg > 1:2027726/1‑71 (MQ=255) cGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGcc > 1:2410609/1‑64 (MQ=255) cGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATg < 1:454582/71‑1 (MQ=255) cGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATg < 1:4391037/71‑1 (MQ=255) gATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGa > 1:425324/1‑50 (MQ=255) gATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTaa < 1:1850617/59‑1 (MQ=255) | TGCTGCGCAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCCGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGAATG > AP009048/3684970‑3685103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |