New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 4492052	60 (1.200)	3 (0.070)	3/92	NT	5.1%	coding (55/1083 nt)	yjgQ	conserved inner membrane protein
	?	AP009048	= 4492073	57 (1.260)					coding (76/1083 nt)	yjgQ	conserved inner membrane protein

AACCTTTTGGCGTACTTGACCGCTATATCGGTAAAACTATTTTCACCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/4492002‑4492052 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccaGCATGAACAGTGTCATCATGATGGTGGTGAAAATAGTTTTACCGATATAGCGGTCAAGTACGCCAAAAGG  <  AP009048/4492073‑4492004                                                                                                                           AACCTTTTGGCGTACTTGACCGCTATATCGGTAAAACTATTTTCACCACCATCATGAACAGTGTCATCATG                                                    <  1:2402297/71‑1       TTGGCGTACTTGACCGCTATATCGGTAAAACTATTTTCACCACCA                                                                        >  1:513220/1‑45          GCGTACTTGACCGCTATATCGGTAAAACTATTTTCACCACCAGCATGAACAGTGTCATCATGATGGTGGT                                            <  1:879705/70‑1                       CTATATCGGTAAAACTATTTTCACCACCAGCATGAACAGTGTCATCATGATGG                                                >  1:563879/1‑53                                                 CCAGCATGAACAGTGTCATCATGATGGTGGTGAAAATAGTTTTACCGATATAGCGGTCAAGTACGCCAA      >  1:4084656/1‑69                                                   AGCATGAACAGTGTCATCATGATGGTGGTGAAAATAGTTTTACCGATATAGCGGTCAAGTACGCCAAAAGG  >  1:1390400/1‑71                                                   AGCATGAACAGTGTCATCATGATGGTGGTGAAAATAGTTTTACCGATATAGCGGTCAAGTACGCCAAAAGG  >  1:2793816/1‑71                                                   AGCATGAACAGTGTCATCATGATGGTGGTGAAAATAGTTTTACCGATATAGCGGTCAAGTACGCCAAAAGG  <  1:3494903/71‑1                                                                                                                           AACCTTTTGGCGTACTTGACCGCTATATCGGTAAAACTATTTTCACCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/4492002‑4492052 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccaGCATGAACAGTGTCATCATGATGGTGGTGAAAATAGTTTTACCGATATAGCGGTCAAGTACGCCAAAAGG  <  AP009048/4492073‑4492004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.