| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3716851 = | 70 (1.400) | 3 (0.070) | 3/88 | NT | 4.8% | coding (28/1542 nt) | atpA | F1 sector of membrane‑bound ATP synthase, alpha subunit |
| ? | AP009048 | 3716881 = | 58 (1.350) | coding (58/1542 nt) | atpA | F1 sector of membrane‑bound ATP synthase, alpha subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3716926‑3716851‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagttcAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTTCTGTAAGTGACGGTGTTATCCGCATTCACG > AP009048/3716881‑3716950 TTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGAT > 1:4366591/1‑70TTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGAT > 1:1927867/1‑70 ACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATC < 1:3317789/69‑1 CAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAGT < 1:676231/71‑1 CAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAGT < 1:404920/71‑1 CAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAG < 1:3469256/70‑1 CAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAG < 1:1959621/70‑1 AGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAGTT < 1:234130/71‑1 AAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAGTTC > 1:1513524/1‑70 TGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATC > 1:2783161/1‑45 GAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCA > 1:4155052/1‑45 GCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGAT > 1:2098203/1‑41 TTCACTCACAACATTGAACTGAGCAATTCGCTGCTTGATCAGTTC > 1:1044353/1‑45 TTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAGTT < 1:2220049/44‑1 TCACAACATTGAACTGAGCAATGCGCTGCTTGATC < 1:1907636/35‑1 ACTGAGCAATGCGCTGCTTGATCAGTTCAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTTCTG > 1:2346979/1‑71 ACTGAGCAATGCGCTGCTTGATCAGTTCAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTT < 1:2310710/68‑1 TGAGCAATGCGCTGCTTGATCAGTTCAATGTTGTGAGTGAAGCTCAC < 1:1280527/47‑1 TCAGTTCAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTTCTGTA < 1:2458023/52‑1 CAGTTCAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTTCTGTAAGTGACGGTGTTATCCGCAT > 1:2589862/1‑71 AGTTCAATGTTGTGAGTGAAGCTCACAACGATGGTACTATTGTTTCTGTAAGTGACGGTGTTATCCGCATT < 1:3239921/71‑1 AGTTCAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTT > 1:4209176/1‑45 GTTCAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTTCTGTAAGTGACGGTGTTATCCGCAT < 1:1971550/69‑1 TTCAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTTCTGTAAGTGACGGTGTTATCCGCATTCA < 1:1731989/71‑1 TTCAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTTCTGTAAGTGACGGTGTTATCC < 1:166052/64‑1 TTCAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTTCTGTAAGTGACGGTGTTA < 1:3650578/61‑1 CAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTTCTGTAAGTGACGGTGTTATCCGCATTCACG > 1:1314765/1‑71 CAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTTCTGTAAGTGACGGTGTTATCCGCATTCACG > 1:4453016/1‑71 CAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTTCTGTAAGTGACGGTGTTATCCGCATTCAC < 1:3409336/70‑1 CAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTTCTGTAAGTGACGGTGTTATCCGCATTC > 1:1270724/1‑68 TTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3716926‑3716851‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagttcAATGTTGTGAGTGAAGCTCACAACGAAGGTACTATTGTTTCTGTAAGTGACGGTGTTATCCGCATTCACG > AP009048/3716881‑3716950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |