| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3277760 = | 98 (1.960) | 3 (0.070) | 3/94 | NT | 3.1% | coding (761/810 nt) | agaR | DNA‑binding transcriptional dual regulator |
| ? | AP009048 | 3277781 = | 98 (2.130) | coding (740/810 nt) | agaR | DNA‑binding transcriptional dual regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGTTTACATAAGATCATTGATACTCAACGTATCGACATGATCATTGTTGATGAAGGCATTCCTGCGGATAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3277833‑3277760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctTCATCAACAATGATCATGTCGATACGTTGAGTATCAATGATCTTATGTAAACTGGAACGATTGAACTTA > AP009048/3277781‑3277849 AGTTTACATAAGATCATTGATACTCAACGTATCGACATGATCATTGTTGATGAAGGCATTCCTGCGGATAG < 1:3226732/71‑1 GTTTACATAAGATCCTTGATACTCAACGTATCGACATGATCATTGTTGATGAAGGCATTCCTGCGGATAGC < 1:2260623/71‑1 GTTTACATAAGATCATTGATACTCAACGTATCGACATGATCATTGTTGATGAAGGCATTCCTGCGGATAGC < 1:1505103/71‑1 GTTTACATAAGATCATTGATACTCAACGTATCGACATGATCATTGTTGATGAAGGCATTCCTGCGGATAG > 1:1587327/1‑70 TTACATAAGATCATTGATACTCAACGTATCGACATGATCATTGTTGATGAAGGCATTCCTGCGGATAGCCT > 1:2156086/1‑71 CATTGATACTCAACGTATCGACATGATCATTGTTGATGAAGGCATTCCTGCGGATAGC < 1:4112851/58‑1 ATCGACATGATCATTGTTGATGAAGGCATTCCTGCGGATAGCC > 1:4246399/1‑43 ACATGATCATTGTTGATGAAGGCATTCCTGCGGATAGCC < 1:2024364/39‑1 ATGATCATTGTTGATGAAGGCATTCCTGCGGATAGCCT > 1:1844630/1‑38 GATGAAGGCATTCCTGCGGATAGCCTTCATCAACAATGATCATGTCGATACGTTGAGAATCAATGATCTTA > 1:2404946/1‑71 ATTCCTGCGGATAGCCTTCATCAACAATGATCATGTCGATACGTTGAGTATCAATGATC < 1:3850947/59‑1 TCCTGCGGATAGCCTTCATCAACAATGATCATGTCGATACGTTGAGTATCA > 1:81864/1‑51 GCCTTCATCAACAATGATCATGTCGATACGTTGAGTATCAATGATCTTATGTAAACTGGAACGATTGAACT > 1:3592452/1‑71 GCCTTCATCAACAATGATCATGTCGATACGTTGAGTATCAATGATCTTATGTAAACTGGAACGATTGAAC > 1:3670666/1‑70 CCTTCATCAACAATGATCATGTCGATACGTTGAGTATCAATGATCTTATGTAAACTGGAACGATTGAACTT < 1:3675916/71‑1 CCTTCATCAACAATGATCATGTCGATACGTTGAGTATCAATGATCTTATGTAAACTGGAACGATTGAACTT < 1:517186/71‑1 CCTTCATCAACAATGATCATGTCGATACGTTGAGTATCAATGATCTTATGTAAACTGGAACGATTGAACTT < 1:4097331/71‑1 CCTTCATCAACAATGATCATGTCGATACGTTGAGTATCAATGATCTTATGTAAACTGGAACGATTGAACT > 1:9450/1‑70 CCTTCATCAACAATGATCATGTCGATACGTTGAGTATCAATGATCTTATGTAAACTGGAACGATTGAACT < 1:3860991/70‑1 CCTTCATCAACAATGATCATGTCGATACGTTGAGTATCAATGATCTT < 1:3699085/47‑1 CCTTCATCAACAATGATCATATAGATACGTTGAGTATCAATGATCTTATGTAAACTGGAACGATTGAACT < 1:1571902/70‑1 CTTCATCAACAATGATCATGTCGATACGTTGAGTATCAATGATCTTATGTAAACTGGAACGATTGAACTTA < 1:4360280/71‑1 TTCATCAACAATGATCATGTCGATACGTTGAGTATCAATGATCT < 1:4046569/44‑1 AGTTTACATAAGATCATTGATACTCAACGTATCGACATGATCATTGTTGATGAAGGCATTCCTGCGGATAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3277833‑3277760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctTCATCAACAATGATCATGTCGATACGTTGAGTATCAATGATCTTATGTAAACTGGAACGATTGAACTTA > AP009048/3277781‑3277849 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |