| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3271909 | 41 (0.820) | 3 (0.070) | 3/94 | NT | 6.4% | coding (704/891 nt) | garR | tartronate semialdehyde reductase |
| ? | AP009048 | = 3271923 | 50 (1.090) | coding (690/891 nt) | garR | tartronate semialdehyde reductase | |||||
AGCGGCAGTTGTGCGCCGACGCCGTGAGAAGTATCCAGCGCATTCGCCAGATCCTTAATATGCAGATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3271840‑3271909‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaGCCGGGCTTCCGTATTGATCTGCATATTAAGGATCTGGCGAATGCGCTGGATACTTCTCACGGCGTCGG < AP009048/3271923‑3271855 AGCGGCAGTTGTGCGCCGACGCCGTGAGAAGTATCCAGCGCATTCGCCAGATCCTTAATATGCAGATCAA > 1:1362680/1‑70 GCCGACGCCGTGAGAAGTATCCAGCGCATTCGCCAGATCCTTAATATGCAGATC > 1:3058983/1‑54 CGACGCCGTGAGAAGTATCCAGCGCATTCGCCAGATCCTTAATATGCAGATCAAGCCGGGCTTCCGTATTG < 1:1912796/71‑1 GACGCCGTGAGAAGTATCCAGCGCATTCGCCAGATCCTTAATATGCAGATCAAGCCGGGCTTCCGTATTGA > 1:1473369/1‑71 GACGCCGTGAGAAGTATCCAGCGCATTCGCCAGATCCTTAATATGCAGATCAAGCCGGGCTTCCGTATTGA < 1:1898701/71‑1 GTGAGAAGTATCCAGCGCATTCGCCAGATCCTTAATATGCAGATCAA < 1:3604302/47‑1 GAAGTATCCAGCGCATTCGCCAGATCCTTAATATGCAGATCAA > 1:2038551/1‑43 TCAAGCCGGGCTTCCGTATTGATCTGCATATTAAGGATCTGGCGAATGCGCTGGATACTTCTCACGGCGTC > 1:2162073/1‑71 TCAAGCCGGGCTTCCGTATTGATCTGCATATTAAGGATCTGGCGAATGCGCTGGATACTTCTCACGGCGTC > 1:4290323/1‑71 TCAAGCCGGGCTTCCGTATTGATCTGCATATTAAGGATC > 1:1397194/1‑39 CAAGCCGGGCTTCCGTATTGATCTGCATATTAAGGATCTGGCGAATGCGCTGGATACTTCTCACGGCGTCG > 1:1014993/1‑71 CAAGCCGGGCTTCCGTATTGATCTGCATATTAAGGATCTGGCGAATGCGCTGGATACTTCTCACGGCGTCG > 1:1210433/1‑71 CAAGCCGGGCTTCCGTATTGATCTGCATATTAAGGATCTGGCGAATGCGCTGGATACTTCTCACGGCGTCG > 1:679189/1‑71 AAGCCGGGCTTCCGTATTGATCTGCATATTAAGGATCTGGCGAATGCGCTGGATACTTCTCACGGCGTCGG > 1:710124/1‑71 AAGCCGGGCTTCCGTATTGATCTGCATATTAAGGATCTGGCGAATGCGCTGGATACTTCTCACGGCGTCG < 1:3273319/70‑1 AGCGGCAGTTGTGCGCCGACGCCGTGAGAAGTATCCAGCGCATTCGCCAGATCCTTAATATGCAGATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3271840‑3271909‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaGCCGGGCTTCCGTATTGATCTGCATATTAAGGATCTGGCGAATGCGCTGGATACTTCTCACGGCGTCGG < AP009048/3271923‑3271855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |