| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2340750 = | 64 (1.280) | 4 (0.090) | 3/90 | NT | 6.8% | coding (565/1689 nt) | yfaA | hypothetical protein |
| ? | AP009048 | 2340779 = | 54 (1.220) | coding (536/1689 nt) | yfaA | hypothetical protein | |||||
GCTACCAGCGACAGCCAGTTAAGCAAAACGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTTTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2340825‑2340750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatcTTGATGCTACTGATTTCCGTTTTGCTTAACTGGCTGTCGCTGGTAGCGGCAAACAACAATGGCTC > AP009048/2340779‑2340843 GCTACCAGCGACAGCCAGTTAAGCAAAACGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGT > 1:935166/1‑71GCTACCAGCGACAGCCAGTTAAGCAAAACGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGT > 1:1711923/1‑71 CTACCAGCGACAGCCAGTTAAGCAAAACGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTT > 1:2305490/1‑71 TACCAGCGACAGCCAGTTAAGCAAAACGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTT > 1:3864435/1‑70 CCAGCGACAGCCAGTTAAGCAAAACGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTTTAT < 1:619787/71‑1 CCAGCGACAGCCAGTTAAGCAAAACGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTTTAT > 1:3945154/1‑71 CCAGCGACAGCCAGTTAAGCAAAACGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTTTA < 1:3217660/70‑1 CCAGCGACAGCCAGTTAAGCAAAACGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTTT < 1:2943081/69‑1 CAGCGACAGCCAGTTAAGCAAAATGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTTTATC < 1:3452454/71‑1 CAGCGACAGCCAGTTAAGCAAAATGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTTTATC < 1:3457922/71‑1 GTTAAGCAAAACGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTTTAT > 1:1565883/1‑58 TTAAGCAAAACGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTTTATC < 1:1538920/58‑1 CGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTTTAT > 1:627923/1‑47 ATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTTTA < 1:1237512/41‑1 AATAGTGAAACTGTTCCTGTTTATCTTGATGCTACTGATTTCCGTTTTGCTTAACTGGCTGTCGCTGGTAG < 1:909918/71‑1 AGTGAAACTGTTCCTGTTTATCTTGATGCTACTGATTTCCGTTTT > 1:2382347/1‑45 AGTGAAACTGTTCCTGTTTATCTTGATGCTACTGATTTCCGTTTT > 1:207919/1‑45 TGAAACTGTTCCTGTTTATCTTGATGCTACTGATTTCCGTTTTGCTTAACTGGCTGTCGCTGGTAGCGG < 1:4580155/69‑1 TTTATCTTGATGCTACTGATTTCCGTTTTGCTTACCTGGCT < 1:4442362/41‑1 TTTATCTTGATGCTACTGATTTCCGTTTTGCTTAACTGGCTGTCGCTGGTAGCGGCAAACAACAATGGCTC > 1:785746/1‑71 TTTATCTTGATGCTACTGATTTCCGTTTTGCTTAACTGGCTGTCGC > 1:2874572/1‑46 TTTATCTTGATGCTACTGATTTCCGTTTTGCTTAACTGGCTGTCGC > 1:3075542/1‑46 TTTATCTTGATGCTACTGATTTCCGTTTTGCTTAACTGGCTGTCGC > 1:4485997/1‑46 TTTATCTTGATGCTACTGATTTCCGTTTTGCTTAACTGG > 1:179476/1‑39 TTATCTTGATGCTACTGATTTCCGTTTTGCTTAACTGGCTGTCGCTGGTAGC < 1:4022299/52‑1 TATCTTGATGCTACTGATTTCCGTTTTGCTTAACTGGCTGTCGCTGGTAGCGGCAAACAACAATGGCTC > 1:1410763/1‑69 ATCTTGATGCTACTGATTTCCGTTTTGCTTAACTGGCTGTCGCTGGTAGCGG > 1:978233/1‑52 GCTACCAGCGACAGCCAGTTAAGCAAAACGGAAATCAGTAGCATCAAGATAAATAGTGAAACTGTTCCTGTTTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2340825‑2340750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatcTTGATGCTACTGATTTCCGTTTTGCTTAACTGGCTGTCGCTGGTAGCGGCAAACAACAATGGCTC > AP009048/2340779‑2340843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |