| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2107348 | 46 (0.920) | 3 (0.070) | 3/92 | NT | 7.5% | coding (847/993 nt) | wbbI | conserved hypothetical protein |
| ? | AP009048 | = 2107390 | 32 (0.710) | coding (805/993 nt) | wbbI | conserved hypothetical protein | |||||
AGAAATAATTTTTGTATTCTCACTAATTTGCTTATAAGTTTCTATTGTCATGGAGTCAACAATCTCTTGC‑‑ATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2107274‑2107348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCATGA < AP009048/2107390‑2107321 AGAAATAATTTTTGTATTCTCACTAATTTGCTTATAAGTTTCTATTGTCATGGAGTCAACAATCTCTTGC‑‑A > 1:2030334/1‑71 ATAATTTTTGTATTCTCACTAATTTGCTTATAAGTTTCTATTGTCATGGAGTCAACAATCTCTTGC‑‑ATTTC > 1:1109571/1‑71 ATTGTCATGGAGTCAACAATCTCTTGC‑‑ATTTCATTGTAGATAATAGAATAGGATATGC < 1:2281737/58‑1 TTGTCATGGAGTCAACAATCCCTTGCGGATTTCATTGTAGATAATAGAATAGGATATGCAGTGGGATCA < 1:29583/69‑1 TCAACAATCTCTTGC‑‑ATTTCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAA < 1:1704354/57‑1 ATTTCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGA < 1:1761196/58‑1 TTTCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCA > 1:3246085/1‑71 TTTCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCA > 1:4494035/1‑71 TTTCATTGTAGATAATAGAATAGGATATGCAGTGGGATC < 1:1333102/39‑1 TCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCAT < 1:1374207/70‑1 TCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCAT < 1:3522132/70‑1 TCATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCAT > 1:3691943/1‑70 CATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCATGA > 1:3272950/1‑71 AGAAATAATTTTTGTATTCTCACTAATTTGCTTATAAGTTTCTATTGTCATGGAGTCAACAATCTCTTGC‑‑ATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2107274‑2107348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcATTGTAGATAATAGAATAGGATATGCAGTGGGATCAATCAAAGAAATGCAAGAGATTGTTGACTCCATGA < AP009048/2107390‑2107321 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |