New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	2028009 =	56 (1.120)	3 (0.060)	3/96	NT	5.8%	coding (362/816 nt)	yedP	conserved hypothetical protein
	?	AP009048	2028031 =	45 (0.960)					coding (384/816 nt)	yedP	conserved hypothetical protein

GCCTCATGAAGCTGCGTCAGCGCCGCCTGGCTACGGCTTAATCCCGTCCATTCGGCGATGGTTGCATCGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2028081‑2028009 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCT  >  AP009048/2028031‑2028098                                                                                                                                               GCCTCATGAAGCTGCGGCAGCGCCGCCTGGCTACGGCTTAATCCCGTCCATTCGGCGATGGTTGCATCGTC                                                                        <  1:4196836/71‑1   CTCATGAAGCTGCGTCAGCGCCGCCTGGCTACGGCTTAATCCCGTCCATTCGGCGATGGTTGCATCGTCGA                                                                      >  1:4385110/1‑71                          CCTGGCTACGGCTTAATCCCGTCCATTCGGCGATGGTTGCATCGTC                                                                        >  1:3351961/1‑46                                                   TTCGGCGATGGTTGCATCGTCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCAT                        >  1:3739990/1‑69                                                    TCGGCGATGGTTGCATCGTCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGC                             <  1:349456/63‑1                                                       GCGATGGTTGCATCGTCTAATGGACGGGATTAAGCCGTAGCCAGGC                                           <  1:2245095/46‑1                                                                       CGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCT  >  1:4552470/1‑71                                                                                                                                               GCCTCATGAAGCTGCGTCAGCGCCGCCTGGCTACGGCTTAATCCCGTCCATTCGGCGATGGTTGCATCGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2028081‑2028009 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCT  >  AP009048/2028031‑2028098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.