| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1592312 | 50 (1.000) | 4 (0.100) | 3/84 | NT | 8.9% | intergenic (‑62/+256) | yneL/hipA | predicted transcriptional regulator/regulator with hipB |
| ? | AP009048 | = 1592319 | 41 (1.000) | intergenic (‑69/+249) | yneL/hipA | predicted transcriptional regulator/regulator with hipB | |||||
CCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1592236‑1592312‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagtgtctGTCGCATAGACACTGCATACGAAAACACCAGAGGGTGCTGTTACTTATTTAAGGACGGATCAAGCGG < AP009048/1592319‑1592253 CCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCA < 1:394062/71‑1 GGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGT < 1:1609998/71‑1 GTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTC < 1:4248371/71‑1 GTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTC < 1:909472/71‑1 GTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTC < 1:958491/71‑1 CTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGT < 1:2971699/63‑1 TCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGT < 1:963489/64‑1 TCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATG > 1:1285573/1‑54 GCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTGTCGCATAGACAC < 1:2084927/71‑1 TGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATG < 1:1011154/47‑1 TCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATG < 1:3268200/44‑1 AAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAG > 1:1336193/1‑38 AAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTGTCGCATAGACACT > 1:90122/1‑53 TAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTGTCGCATAGACAC > 1:1919802/1‑49 TAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTGTCGCATAGACAC > 1:2869684/1‑49 GCAGTGTCTGTCGCATAGACACTGCATACGAAAACACCAGAGGGTGCTGTTACTTATTTAAGGACGGATCA < 1:193783/71‑1 GCAGTGTCTGTCGCATAGACACTGCATACGAAAACACCAGAGGGTGCTGTTACTTATTTAAGGACGGATC > 1:1574732/1‑70 CAGTGTCTGTCGCATAGACACTGCATACGAAAACACCAGAGGGTGCTGTTAC > 1:2278768/1‑52 AGTGTCTGTCGCATAGACACTGCATACGAAAACACCAGAGGGTGCTGTTACTTATTTAAGGACGGATCAAG < 1:1203057/71‑1 AGTGTCTGTCGCATAGACACTGCATACGAAAACACCAGAGGGTGCTGT < 1:4028112/48‑1 TGTCTGTCGCATAGACACTGCATACGAAAACACCAGAGGGTGCTGTTACTTAT < 1:2642729/53‑1 GTCTGTCGCATAGACACTGCATACGAAAACACCAGAGGGTGCTGTTACTTATTTAAGGACGGATCAAGCGG > 1:339444/1‑71 TCTGTCGCATAGACACTGCATACGAAAACACCAGAGGGTGCTGTTACTTATTTA < 1:2271992/54‑1 TGTCGCATAGACACTGCATACGAAAACACCAGAGGGTGCTGTTACTTAT > 1:1450468/1‑49 CCGGAGTGGACTCATTCCCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1592236‑1592312‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagtgtctGTCGCATAGACACTGCATACGAAAACACCAGAGGGTGCTGTTACTTATTTAAGGACGGATCAAGCGG < AP009048/1592319‑1592253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |