| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 663844 | 39 (0.780) | 4 (0.090) | 4/88 | NT | 9.7% | coding (542/1212 nt) | dacA | D‑alanyl‑D‑alanine carboxypeptidase |
| ? | AP009048 | = 663852 | 41 (0.950) | coding (534/1212 nt) | dacA | D‑alanyl‑D‑alanine carboxypeptidase | |||||
CGGTACGTCACGGATCAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/663768‑663844‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagacGGTACATGGTCTGGATGCTGATGGTCAGTACAGCTCCGCGCGAGATATGGCGCTGATCGGCCAGGCATTG < AP009048/663852‑663783 CGGTACGTCACGGATCAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCAT > 1:3633674/1‑71CGGTACGTCACGGATCAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCAT > 1:4498589/1‑71 TACGTCACGGATCAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCATCATCCA < 1:591782/71‑1 TACGTCACGGATCAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCA < 1:3101224/71‑1 CGTCACGGATCAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAG < 1:4501742/70‑1 TCACGGATCAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGAC > 1:2304347/1‑70 ATCAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACGGTACAT > 1:1064760/1‑71 CCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGAC > 1:1200216/1‑57 CTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACGGTACATGGTCTGGA < 1:827780/71‑1 GCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACGGTACATGGTCTGG > 1:3989038/1‑67 GAGCTGTACTGACCATCAGCATCCAGACGGTACATGGTCT < 1:4420747/40‑1 TCCAGACGGTACATGGTCTGGATGCTGATGGTCAGTACAGCTCCGCGCGAGATATGGCGCTGATCGGCCAG > 1:3698876/1‑71 CAGACGGTACATGGTCTGGATGCTGATGGTCAGTACAGCTCCGCGCGAGATATGGCGCTGATCGGCCAGGC < 1:1876919/71‑1 CAGACGGTACATGGTCTGGATGCTGATGGTCAGTACAGCTCCGCGCGAGATATGGCGCTGATCGGCCAGGC < 1:1752919/71‑1 AGACGGTACATGGTCTGGATGCTGATGGTCAGTACAGCTCCGCGCGAGATATGGCGCTGATCGGCCAGGCA > 1:3731461/1‑71 AGACGGTACATGGTCTGGATGCTGATGGTCAGTACAGCTCCGCGCGAG < 1:761384/48‑1 ACGGTACATGGTCTGGATGCTGATGGTCAGTACAGCTCCGCGCGAGATAT < 1:495782/50‑1 CGGTACATGGTCTGGATGCTGATGGTCAGTACAGCTCCGCGCGAGATATGGCGCTGATCGGCCAGGCATTG < 1:1783628/71‑1 CGGTACGTCACGGATCAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/663768‑663844‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagacGGTACATGGTCTGGATGCTGATGGTCAGTACAGCTCCGCGCGAGATATGGCGCTGATCGGCCAGGCATTG < AP009048/663852‑663783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |