| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 390073 = | 70 (1.400) | 7 (0.160) | 4/88 | NT | 10.7% | coding (599/1461 nt) | yaiT | hypothetical protein |
| ? | AP009048 | 390095 = | 56 (1.300) | coding (621/1461 nt) | yaiT | hypothetical protein | |||||
AGTATTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/390146‑390073‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatcaaTATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACAC > AP009048/390095‑390163 AGTATTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACA < 1:1369365/70‑1 TTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACATCAA < 1:2817774/70‑1 ATGTTACTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGC < 1:534647/52‑1 ATGTTACTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGC < 1:3981236/52‑1 ATGTTACTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGC < 1:3803404/52‑1 ATGTTACTTTCTACATCAATATTTCCAATAACTCCCGC > 1:3349148/1‑38 GTTACTTTCTACATCAATATTTCCAATAACTCCCGCGTTGC > 1:4475688/1‑41 CTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTAC > 1:1272419/1‑68 CTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTAC > 1:4136267/1‑68 ATCAATTTTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACT < 1:576254/57‑1 ATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTA < 1:139257/71‑1 ATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTAC < 1:1155076/60‑1 ATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTG < 1:3929682/37‑1 CAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACA > 1:1819177/1‑71 CAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACA > 1:650345/1‑71 AATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACAC < 1:1427071/71‑1 AATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGG > 1:1410725/1‑47 AGTATTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/390146‑390073‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatcaaTATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACAC > AP009048/390095‑390163 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |