New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 381043 =NA (NA)4 (0.090) 3/88 NT NA coding (146/906 nt) insD IS2 insertion element transposase InsAB'
?AP009048 381065 = NA (NA)coding (168/906 nt) insD IS2 insertion element transposase InsAB'

Only 100 of 138 total aligned reads displayed.

CAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/381119‑381043
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgtatACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCA  >  AP009048/381065‑381134
                                                                                                                                                   
CAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACAT                                                                              <  1:482452/71‑1
CAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACAT                                                                              <  1:3420544/71‑1
 AGCGCCCATACCCGACGATAAGCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATC                                                                             >  1:928132/1‑71
 AGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATC                                                                             >  1:2535664/1‑71
 AGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATC                                                                             >  1:4046252/1‑71
 AGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATC                                                                             <  1:2817475/71‑1
  GCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCC                                                                            <  1:962382/71‑1
  GCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCC                                                                            <  1:2284050/71‑1
  GCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCC                                                                            <  1:495587/71‑1
  GCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCC                                                                            >  1:4094710/1‑71
  GCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCC                                                                            <  1:2648311/71‑1
   CGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCG                                                                           <  1:2215821/71‑1
   CGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCG                                                                           <  1:2316644/71‑1
   CGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCG                                                                           <  1:423258/71‑1
   CGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCC                                                                            <  1:3823836/70‑1
   CGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACAT                                                                              <  1:1883028/68‑1
    GCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCG                                                                           >  1:3280997/1‑70
    GCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACACCCG                                                                           >  1:1721255/1‑70
     CCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATGCGGAGAAGCACATCCGTA                                                                         <  1:151998/71‑1
     CCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGT                                                                          <  1:631412/70‑1
     CCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGT                                                                          <  1:1935659/70‑1
      CCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTAT                                                                        <  1:3171332/71‑1
      CCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTAT                                                                        >  1:2768278/1‑71
      CCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTAT                                                                        >  1:4562833/1‑71
      CCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTAT                                                                        >  1:1031234/1‑71
      CCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTAT                                                                        <  1:1014093/71‑1
      CCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTAT                                                                        >  1:1069232/1‑71
      CCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTAT                                                                        >  1:1354746/1‑71
      CCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTA                                                                         >  1:2676735/1‑70
       CATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTAT                                                                        >  1:2273179/1‑70
         TACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGT                                                                          <  1:1317148/66‑1
         TACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCC                                                                            >  1:1840578/1‑64
          ACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTA                                                                         >  1:2794095/1‑66
           CCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTA                                                                         >  1:3190824/1‑65
            CCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGT                                                                          <  1:1599800/63‑1
             CGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGT                                                                          <  1:2466985/62‑1
              GACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCC                                                                            >  1:4130539/1‑59
              GACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATC                                                                             >  1:2010230/1‑58
                  ATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACAT                                                                              >  1:4230737/1‑53
                    AACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTA                                                                         >  1:587918/1‑56
                                     TCTCCGATAACATGGTGTATACGGAGAAGCACATCCGT                                                                          <  1:2312714/38‑1
                                       TCCGATAACATGGTGTATACGGAGAAGCACATCCGTA                                                                         >  1:889235/1‑37
                                                      TATACGGAGAAGGACATCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATG                        >  1:526170/1‑71
                                                      TATACGGAGAAGCACATCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATG                        >  1:2790757/1‑71
                                                       ATACGGAGAAGCACATCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGG                       >  1:3034355/1‑71
                                                                 GCACATCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTT                                     <  1:4334003/47‑1
                                                                      TCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGA        >  1:1107778/1‑71
                                                                      TCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGA        >  1:1505331/1‑71
                                                                      TCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTT              <  1:638630/65‑1
                                                                      TCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGG                       >  1:3942305/1‑56
                                                                       CCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTT              <  1:3664038/64‑1
                                                                       CCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTA                          >  1:878661/1‑52
                                                                       CCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGG                            <  1:2473049/50‑1
                                                                       CCGTATACACCATGTTATCGGAGAGCTGCCAACGTAT                                         <  1:324113/37‑1
                                                                       CCGTATACACCATGTTATCGGAGAGCTGCCAACGTAT                                         <  1:707404/37‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATTGGCGCTGCTTCGCAGA        <  1:56349/69‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACA      <  1:3055391/71‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACA      <  1:2560923/71‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACA      <  1:2428372/71‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACA      <  1:3048668/71‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGAC       <  1:1850271/70‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGAC       <  1:1526542/70‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGAC       <  1:1405154/70‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGAC       <  1:1589182/70‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGA        <  1:3273139/69‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGA        <  1:198018/69‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGA        <  1:3425298/69‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGA        <  1:3965467/69‑1
                                                                        CGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAG         <  1:2368176/68‑1
                                                                         GTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAG     >  1:148867/1‑71
                                                                         GTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAG     >  1:2899270/1‑71
                                                                         GTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAG     <  1:3350644/71‑1
                                                                         GTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTC             <  1:4394659/63‑1
                                                                          ggTACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCG                              >  1:1293368/3‑45
                                                                          TATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGG    <  1:495827/71‑1
                                                                          TATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGG    >  1:2012082/1‑71
                                                                          TATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGG    <  1:555454/71‑1
                                                                          TATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGG    <  1:3843227/71‑1
                                                                          TATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGG    >  1:2927868/1‑71
                                                                          TATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTG                 >  1:3862743/1‑58
                                                                          TATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCG                    >  1:2837854/1‑55
                                                                          TATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTA                          >  1:1217100/1‑49
                                                                          TATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGG                             >  1:4445591/1‑46
                                                                          TATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGG                             >  1:3683148/1‑46
                                                                          TATACACCATGTTATCGGAGAGCTGCCAACGTATG                                        <  1:1188339/35‑1
                                                                          TATACACCATGTTATCGGAGAGATGCCAACGTATGGTTATCGTCGGGTA                          <  1:2858886/49‑1
                                                                           ATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGG    <  1:2397783/70‑1
                                                                           ATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGC           >  1:4327210/1‑63
                                                                           ATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGC           >  1:2269581/1‑63
                                                                           ATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCG            <  1:739635/62‑1
                                                                            TACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCA  >  1:1439513/1‑71
                                                                            TACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGC   <  1:1385086/70‑1
                                                                            TACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGC   <  1:715305/70‑1
                                                                            TACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGG    >  1:2054797/1‑69
                                                                            TACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGG    >  1:4262300/1‑69
                                                                            TACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACA      >  1:565715/1‑67
                                                                            TACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCG            <  1:3051632/61‑1
                                                                            TACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGG                      <  1:953869/51‑1
                                                                            TACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGG                       <  1:23164/50‑1
                                                                            TACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTA                          >  1:1930282/1‑47
                                                                                                                                                   
CAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/381119‑381043
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgtatACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCA  >  AP009048/381065‑381134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.