| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 380919 | NA (NA) | 3 (0.070) | 3/94 | NT | NA | coding (390/411 nt) coding (22/906 nt) |
insC insD |
IS2 insertion element repressor InsA IS2 insertion element transposase InsAB' |
| ? | AP009048 | = 380937 | NA (NA) | coding (408/411 nt) coding (40/906 nt) |
insC insD |
IS2 insertion element repressor InsA IS2 insertion element transposase InsAB' |
|||||
CGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/380846‑380919‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttaCTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCT < AP009048/380937‑380868 CGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCC > 1:4184704/1‑71CGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCC > 1:3959469/1‑71CGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCC > 1:36280/1‑71 GATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCT < 1:645375/71‑1 GATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCT < 1:87111/71‑1 ATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCT > 1:580883/1‑70 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA > 1:3323657/1‑71 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA < 1:614696/71‑1 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA > 1:4410154/1‑71 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA > 1:4335234/1‑71 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA > 1:863663/1‑71 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA < 1:3352378/71‑1 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA > 1:3216336/1‑71 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA > 1:1955405/1‑71 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA < 1:2274532/71‑1 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT < 1:3662482/70‑1 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT < 1:4301981/70‑1 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT < 1:1638327/70‑1 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT < 1:4393122/70‑1 GAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA > 1:943575/1‑63 AACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA < 1:1581150/62‑1 ACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA < 1:2029570/61‑1 CAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA > 1:2485097/1‑55 CAAAGAAGCCGTTGAATATGGACAGGCAAAAAAGTGGATAGCGCACGCGCCC > 1:2333066/1‑52 AAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCC > 1:3286463/1‑51 AGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTACTCCCCATCCCCGGGCAAT < 1:3422597/71‑1 CGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTACTCCCCATCCCCGGGCAATAAGGGC < 1:3656334/71‑1 GTTGAATATGGACGGGCAAAAAAGTGGATAGGGCACGCGCCCTTA > 1:1475079/1‑45 TTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT < 1:2056169/43‑1 TTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCT < 1:1670289/42‑1 TGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT > 1:2258095/1‑42 TGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT < 1:4418098/42‑1 GAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA > 1:4589471/1‑42 GAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA > 1:3778854/1‑42 GAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA > 1:250323/1‑42 GAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCT < 1:2167572/40‑1 TATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCC > 1:864877/1‑36 AAAAGTGGATAGCGCACGCGCCCTTACTCCCCATCCCCGGGCAAT > 1:4452673/1‑45 CTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCT < 1:4303738/71‑1 CTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGC > 1:2866388/1‑70 TACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTC > 1:4482523/1‑71 TACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTC > 1:1045061/1‑71 TACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCC > 1:2734772/1‑51 ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCTACTTTTTTGCCCGTCCATATTCAAC > 1:291884/1‑64 ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCTATATTCAACGGCTTCT > 1:2603872/1‑71 ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCT > 1:985098/1‑71 ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCT > 1:3788765/1‑71 ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCT > 1:3783443/1‑71 ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCT > 1:1953592/1‑71 ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTC > 1:4110569/1‑70 ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTC < 1:2588800/70‑1 ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTT < 1:1225881/47‑1 CGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/380846‑380919‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttaCTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCT < AP009048/380937‑380868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |