| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 228057 = | NA (NA) | 3 (0.070) | 3/92 | NT | NA | noncoding (2299/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 228076 = | NA (NA) | noncoding (2318/2904 nt) | rrlH | 23S ribosomal RNA | |||||
Only 100 of 109 total aligned reads displayed.
CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/228131‑228057‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggaGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT > AP009048/228076‑228145 CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:4349702/71‑1CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:1751862/71‑1 ACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA < 1:3705419/71‑1 ACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA < 1:2386129/71‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTACCCTCCTGATGTCCGACCAG > 1:471127/1‑71 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:1492028/71‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:1065523/1‑71 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:4146039/1‑71 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:3942912/71‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:1187018/1‑71 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:1208450/1‑71 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:3462794/71‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:2605228/1‑71 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:1422452/1‑71 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCTTGATGTCCGACCAGG < 1:1091451/71‑1 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:866188/71‑1 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:45610/1‑70 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:834456/70‑1 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:171629/1‑69 TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:153647/1‑71 CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:2696487/69‑1 CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:4496025/69‑1 CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:4262462/69‑1 CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:1049281/69‑1 CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:908388/69‑1 TCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:1868934/68‑1 CGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG > 1:3461999/1‑66 TCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:1146570/59‑1 TCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:720547/59‑1 TCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:3467104/58‑1 TCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:983557/56‑1 CACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:3605770/58‑1 ACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:3885498/56‑1 CGCTCGCAGTCAAGCTGGCTTATGCCATTTCACTAACCTCCTGATGTCCGACCAGG < 1:2610190/56‑1 CGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:1535155/57‑1 GCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:3947631/55‑1 CTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:3027281/1‑53 GTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:2380271/47‑1 GTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:2354936/47‑1 TCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:1375668/44‑1 CAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:4585631/1‑47 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:1358315/46‑1 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:1059886/1‑46 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:1391421/1‑44 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:1189216/1‑44 TGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:4534834/42‑1 TGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:3463447/42‑1 TGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:4024483/1‑42 TTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:2626245/1‑38 ACCTCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGC > 1:116640/1‑69 CTCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTG < 1:1292843/48‑1 TCCTGATGTCCGACCAGGATGTTAGTGCAATGGCATAAGCCA < 1:2390102/42‑1 acACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGC < 1:4080608/52‑1 catGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:3787846/4‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:259216/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:361082/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:4411901/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAG > 1:2576640/1‑67 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGC > 1:2253126/1‑56 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACG > 1:1686533/1‑48 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGAAGGCGCGAGCAGGTGCGAAAGCAGG > 1:2694101/1‑71 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT < 1:1699930/71‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT < 1:2734425/71‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT > 1:1374491/1‑71 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT > 1:2557659/1‑71 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT < 1:943304/71‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAA > 1:1803519/1‑64 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGG > 1:4277318/1‑58 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGA > 1:827103/1‑45 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGT < 1:82307/43‑1 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT > 1:4573719/1‑70 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT > 1:897146/1‑70 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAA < 1:2495953/64‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGTTGCGAAAGCAGGTCA < 1:2185195/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:4539354/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:4466184/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:4568567/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:998563/1‑71 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:2133666/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:1477548/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:1696634/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:1726716/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:1740742/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:1784518/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:2153353/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:229721/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:3517538/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGC < 1:3752943/47‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:2135808/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:1130208/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:4507913/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:1460915/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:2093195/1‑70 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:3444897/1‑70 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:1057423/1‑70 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAG > 1:3857285/1‑66 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGC > 1:1524652/1‑64 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTG > 1:2012412/1‑57 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCCAGCAGGTGCGAAAGCAGGTCA > 1:3945401/1‑70 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGAC > 1:980247/1‑43 CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/228131‑228057‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggaGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT > AP009048/228076‑228145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |