| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 71265 | 53 (1.060) | 33 (0.910) +AGGGTCCCTAAGTC |
19/74 | NT | 53.2% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | AP009048 | 3464879 = | 27 (0.540) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/71196‑71265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGC > AP009048/3464879‑3464928 |||||||||||||| GGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA < 1:368998/71‑1 CCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGG < 1:4577005/71‑1 AGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGT > 1:3601592/1‑71 CCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC > 1:40117/1‑71 CCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCC > 1:4594555/1‑71 CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCC > 1:3476460/1‑70 GCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAG > 1:1646799/1‑71 CGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGT < 1:1151462/71‑1 CGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAG > 1:1621110/1‑60 ttcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAA < 1:2800835/68‑1 ttcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTA > 1:1233892/4‑70 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAA < 1:420242/69‑1 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGT > 1:2787658/2‑65 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGG < 1:2364991/54‑1 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAG < 1:758022/52‑1 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAG < 1:964339/52‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:199141/71‑1 GGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGT > 1:1404123/1‑58 TTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAA > 1:291467/1‑61 TTGTGAAGAAAAAGTGAATGATGTACCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGG < 1:1094915/69‑1 TGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGTGTCCCTAAGTCTAAAACGAAAGGCC < 1:1050338/70‑1 TGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCC > 1:3039405/1‑50 GTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT < 1:2174594/50‑1 GTGAAGAAAAAGTGAATGATGTACCCGTCAAGTTGTCATAAAGGGTCCCTA < 1:3034832/51‑1 TGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCA < 1:3872458/70‑1 AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGTGTCCCTAAGTCTAAAACGAAAGGCCCAGTC > 1:664362/1‑71 AGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCT > 1:4222906/1‑71 AGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT > 1:1266235/1‑46 AGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA < 1:3890504/38‑1 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTT < 1:1064407/71‑1 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGT < 1:2618713/41‑1 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGT < 1:908598/41‑1 AAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGG < 1:2294761/39‑1 AGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGAC > 1:568212/1‑71 AGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCC > 1:229182/1‑59 AGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGT > 1:3520187/1‑36 GTGAATGATGTAGCCGTCAAGTTGTGATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACT < 1:1623859/71‑1 GTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAA > 1:3851563/1‑49 GAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC < 1:2863092/65‑1 ATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:4438245/1‑50 TGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGAC > 1:4454398/1‑65 TGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA > 1:3418948/1‑36 GTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTC > 1:1863576/1‑71 GTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGG < 1:2066495/47‑1 AGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGT > 1:24335/1‑71 AGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACT < 1:1424631/60‑1 AGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACT < 1:1615349/60‑1 TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCG < 1:2310829/52‑1 TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCG < 1:1130500/52‑1 TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTT < 1:1442747/49‑1 TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCC < 1:1178790/42‑1 CAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCG > 1:4031735/1‑64 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATT > 1:4030108/1‑70 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTG > 1:749441/1‑54 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAA > 1:3414585/1‑35 AAGTTGTCATAAAGGGTACCTAAGTCTAAAACGAA > 1:3633128/1‑35 GTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTA < 1:77402/66‑1 TGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAcc > 1:2279512/1‑69 GTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAccg > 1:2041372/1‑68 GTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCA < 1:2231218/37‑1 TCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAccg < 1:397851/70‑4 TCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCG < 1:1808321/44‑1 TAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTG < 1:3378876/45‑1 CCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTT < 1:4088059/49‑1 AAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGC > 1:4118272/1‑36 AAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGC > 1:2411216/1‑36 |||||||||||||| GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/71196‑71265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGC > AP009048/3464879‑3464928 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |