| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 39915 = | 49 (0.980) | 4 (0.090) | 3/92 | NT | 8.3% | coding (472/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding |
| ? | AP009048 | 39938 = | 44 (0.980) | coding (449/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding | |||||
TGGGTAGCCTGAAAACGACTTATACCCGTAGAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/39989‑39915‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taccaTTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTACCCACGTCGGAGCCCGCGCCC > AP009048/39938‑40006 TGGGTAGCCTGAAAACGACTTATACCCGTAGAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATT < 1:816800/71‑1 GGTAGCCTGAAAACGACTTATACCCGTAGAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTAC < 1:1960043/71‑1 GGTAGCCTGAAAACGACTTATACCCGTAGAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTAC < 1:2366161/71‑1 GGTAGCCTGAAAACGACTTATACCCGTAGAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTA < 1:3326324/70‑1 GTAGCCTGAAAACGACTTATACCCGTAGAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTAC > 1:145801/1‑70 GAAAACGACTTATACCCGTAGAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCA < 1:93343/65‑1 GAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATT > 1:4395858/1‑41 AATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATT < 1:973587/39‑1 GATTTATCTTAATGGTAGTAAGTGTTTTATTACCA > 1:3986228/1‑35 ATGGTAGTAAGTGTTTTATTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGG > 1:115925/1‑69 TGGTAGTAAGTGTTTTATTACCATTAAGATAAATCTTACCATTTCTACGGGTATAA > 1:1129623/1‑56 TGGTAGTAAGTGTTTTATTACCATTAAGATAAATCTTACCATTTCTACGGGTATAA > 1:3829255/1‑56 GTAAGTGTTTTATTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTT < 1:4001500/59‑1 TACCATTAAGATAAACCTTACCATTTCTACGGGTATAAG < 1:4418050/39‑1 CCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCA > 1:4401924/1‑46 CCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTT < 1:1863055/44‑1 CCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTT > 1:4155411/1‑43 CATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTACCCACGTCGGAGCCCGCGCCC < 1:1692508/71‑1 TGGGTAGCCTGAAAACGACTTATACCCGTAGAAATGGTAAGATTTATCTTAATGGTAGTAAGTGTTTTATTACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/39989‑39915‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taccaTTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTACCCACGTCGGAGCCCGCGCCC > AP009048/39938‑40006 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |