| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,969,927 | G→A | 17.5% | R161C (CGC→TGC) | lplA ← | lipoate‑protein ligase A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,969,927 | 0 | G | A | 17.5% | 90.0 / 11.3 | 40 | R161C (CGC→TGC) | lplA | lipoate‑protein ligase A |
| Reads supporting (aligned to +/- strand): ref base G (9/24); new base A (3/4); total (12/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
CGGGAACGTACCGACGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTCGCGATAGGCCGAG > Exported/2969857‑2969997 | cgGGAACGTACCGACGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAggcg > 1:175149/1‑71 (MQ=255)cgGGAACGTACCGACGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAggcg > 1:2407291/1‑71 (MQ=255) tACCGACGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGt > 1:3130741/1‑71 (MQ=255) cGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCAt < 1:995092/71‑1 (MQ=255) cGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCAt < 1:598449/71‑1 (MQ=255) cGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCAt < 1:3162554/71‑1 (MQ=255) cTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGc < 1:4222307/71‑1 (MQ=255) tCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCaa < 1:4568464/70‑1 (MQ=255) tCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAg > 1:3019297/1‑71 (MQ=255) tCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAg > 1:3749224/1‑71 (MQ=255) tCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAg > 1:2408622/1‑71 (MQ=255) tCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAg > 1:1628663/1‑71 (MQ=255) tCGCCGCCAATTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCaa < 1:5024958/70‑1 (MQ=255) tttCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGc < 1:4617311/58‑1 (MQ=255) tttCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGc < 1:362834/58‑1 (MQ=255) tttCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGc < 1:2829803/58‑1 (MQ=255) tttCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGc < 1:3058542/58‑1 (MQ=255) tCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCgtgg > 1:1390307/1‑68 (MQ=255) tttttATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGc < 1:2837458/44‑1 (MQ=255) tttttATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGc < 1:1617240/44‑1 (MQ=255) tttttATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGc < 1:2026354/44‑1 (MQ=255) tttttATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGc < 1:2597386/44‑1 (MQ=255) tttttATCCGGATTGAGATAGTTTGCCAGGCAGCTGAGGTCGGCATTGAGTAGCAAgg < 1:128278/58‑1 (MQ=255) tttttATCCGGATTGAGATAGTTTGCCAGGCAGCTGAGGTCGGCATTGAGTAGCAAgg < 1:930088/58‑1 (MQ=255) tttttATCCGGATTGAGATAGTTTGCCAGGCAGCTGAGGTCGGCATTGAGTAGCAAgg < 1:2644564/58‑1 (MQ=255) tttttATCCGGATTGAGATAGTTTGCCAGGCAGCTGAGGTCGGCATTGAGTAGCAAgg < 1:3166303/58‑1 (MQ=255) tttATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGa < 1:491241/68‑1 (MQ=255) tttATCCGGATTGAGATAGTTTGCCAGGCAGCTGAGGTCGGCATTGAGTAGCAAGGTg > 1:749839/1‑58 (MQ=255) tttATCCGGATTGAGATAGTTTGCCAGGCAGCTGAGGTCGGCATTGAGTAGCAAGGTg > 1:4039071/1‑58 (MQ=255) tttATCCGGATTGAGATAGTTTGCCAGGCAGCTGAGGTCGGCATTGAGTAGCAAGGTg > 1:2250038/1‑58 (MQ=255) gagaTAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGaa > 1:3925752/1‑57 (MQ=255) gagaTAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGaa > 1:4410173/1‑57 (MQ=255) gTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCgtg > 1:3276183/1‑45 (MQ=255) tttGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGaa < 1:2850491/50‑1 (MQ=255) tttGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGaa < 1:4612019/50‑1 (MQ=255) tttGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGaa < 1:3695728/50‑1 (MQ=255) ttGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTc < 1:3179365/67‑1 (MQ=255) ttGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTc < 1:47077/67‑1 (MQ=255) ttGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTc < 1:2532567/67‑1 (MQ=255) tGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTCGCGa < 1:5190545/70‑1 (MQ=255) tGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTCGCGa < 1:1458459/70‑1 (MQ=255) tGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTCGCGa < 1:3308629/70‑1 (MQ=255) ggcggcTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTCGCGATAGGcc > 1:2521496/1‑71 (MQ=255) gcggcTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTCGCGATAGGcc > 1:4827366/1‑70 (MQ=255) gcggcTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTCGCGATAGGcc > 1:4953448/1‑70 (MQ=255) gcggcTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTCGCGATAGGcc > 1:5191612/1‑70 (MQ=255) cggcTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTCGCGATAGGc > 1:4214044/1‑68 (MQ=255) ggcTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTCGCGATAGGCCGAg > 1:3959687/1‑71 (MQ=255) | CGGGAACGTACCGACGTAATGCCTTTCGCCGCCAGTTTCTTTTTATCCGGATTGAGATAGTTTGCCAGGCGGCTGAGGTCGGCATTGAGTAGCAAGGTGCCGTGGTGGAAGCCGCGATCTTTGGTTTCGCGATAGGCCGAG > Exported/2969857‑2969997 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |